Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1108 and Dsui_1109 are separated by 18 nucleotides Dsui_1109 and Dsui_1110 are separated by 15 nucleotides Dsui_1110 and Dsui_1111 are separated by 15 nucleotides
Dsui_1108: Dsui_1108 - AMP-forming long-chain acyl-CoA synthetase, at 1,153,950 to 1,155,929
_1108
Dsui_1109: Dsui_1109 - ABC-type branched-chain amino acid transport systems, ATPase component, at 1,155,948 to 1,156,748
_1109
Dsui_1110: Dsui_1110 - branched-chain amino acid ABC-type transport system, permease component, at 1,156,764 to 1,157,657
_1110
Dsui_1111: Dsui_1111 - ABC-type branched-chain amino acid transport system, permease component, at 1,157,673 to 1,158,740
_1111
Position (kb)
1156
1157
1158 Strain fitness (log2 ratio)
-2
-1
0
1 at 1155.791 kb on - strand at 1155.814 kb on + strand at 1155.904 kb on + strand at 1155.924 kb on + strand at 1155.937 kb on - strand at 1156.224 kb on + strand, within Dsui_1109 at 1156.258 kb on - strand, within Dsui_1109 at 1156.258 kb on - strand, within Dsui_1109 at 1156.277 kb on + strand, within Dsui_1109 at 1156.285 kb on - strand, within Dsui_1109 at 1156.285 kb on - strand, within Dsui_1109 at 1156.394 kb on - strand, within Dsui_1109 at 1156.420 kb on - strand, within Dsui_1109 at 1156.459 kb on + strand, within Dsui_1109 at 1156.502 kb on + strand, within Dsui_1109 at 1156.613 kb on + strand, within Dsui_1109 at 1156.631 kb on + strand at 1156.723 kb on + strand at 1156.730 kb on + strand at 1156.737 kb on - strand at 1156.950 kb on + strand, within Dsui_1110 at 1157.127 kb on - strand, within Dsui_1110 at 1157.127 kb on - strand, within Dsui_1110 at 1157.127 kb on - strand, within Dsui_1110 at 1157.395 kb on - strand, within Dsui_1110 at 1157.395 kb on - strand, within Dsui_1110 at 1157.592 kb on + strand at 1157.651 kb on + strand at 1157.659 kb on - strand at 1157.659 kb on - strand at 1157.696 kb on + strand at 1157.704 kb on - strand at 1157.767 kb on + strand at 1157.794 kb on + strand, within Dsui_1111 at 1157.982 kb on - strand, within Dsui_1111 at 1158.316 kb on - strand, within Dsui_1111 at 1158.353 kb on + strand, within Dsui_1111 at 1158.407 kb on + strand, within Dsui_1111 at 1158.408 kb on + strand, within Dsui_1111 at 1158.454 kb on + strand, within Dsui_1111 at 1158.523 kb on + strand, within Dsui_1111 at 1158.613 kb on + strand, within Dsui_1111
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 1,155,791 - +0.5 1,155,814 + -0.5 1,155,904 + -2.3 1,155,924 + +0.5 1,155,937 - +0.5 1,156,224 + Dsui_1109 0.34 +0.5 1,156,258 - Dsui_1109 0.39 +0.5 1,156,258 - Dsui_1109 0.39 +0.5 1,156,277 + Dsui_1109 0.41 -1.5 1,156,285 - Dsui_1109 0.42 -1.1 1,156,285 - Dsui_1109 0.42 +0.5 1,156,394 - Dsui_1109 0.56 +0.5 1,156,420 - Dsui_1109 0.59 -1.5 1,156,459 + Dsui_1109 0.64 +0.5 1,156,502 + Dsui_1109 0.69 +0.5 1,156,613 + Dsui_1109 0.83 +0.5 1,156,631 + +0.5 1,156,723 + -1.1 1,156,730 + +0.5 1,156,737 - +0.5 1,156,950 + Dsui_1110 0.21 +0.5 1,157,127 - Dsui_1110 0.41 +0.5 1,157,127 - Dsui_1110 0.41 +0.5 1,157,127 - Dsui_1110 0.41 +0.5 1,157,395 - Dsui_1110 0.71 +0.5 1,157,395 - Dsui_1110 0.71 +0.5 1,157,592 + -1.8 1,157,651 + -1.5 1,157,659 - -1.1 1,157,659 - +0.5 1,157,696 + -0.5 1,157,704 - -1.1 1,157,767 + +0.5 1,157,794 + Dsui_1111 0.11 +0.5 1,157,982 - Dsui_1111 0.29 -1.8 1,158,316 - Dsui_1111 0.60 +0.5 1,158,353 + Dsui_1111 0.64 -1.5 1,158,407 + Dsui_1111 0.69 -1.1 1,158,408 + Dsui_1111 0.69 -0.5 1,158,454 + Dsui_1111 0.73 +0.5 1,158,523 + Dsui_1111 0.80 -1.8 1,158,613 + Dsui_1111 0.88 -2.1
Or see this region's nucleotide sequence