Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1027 and Dsui_1028 overlap by 11 nucleotides Dsui_1028 and Dsui_1029 are separated by 16 nucleotides Dsui_1029 and Dsui_1030 are separated by 78 nucleotides
Dsui_1027: Dsui_1027 - RNA methyltransferase, RsmD family, at 1,060,172 to 1,060,780
_1027
Dsui_1028: Dsui_1028 - pantetheine-phosphate adenylyltransferase, at 1,060,770 to 1,061,267
_1028
Dsui_1029: Dsui_1029 - hypothetical protein, at 1,061,284 to 1,061,541
_1029
Dsui_1030: Dsui_1030 - dynamin family protein, at 1,061,620 to 1,063,575
_1030
Position (kb)
1061
1062 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1060.328 kb on - strand at 1060.372 kb on - strand, within Dsui_1027 at 1060.407 kb on + strand, within Dsui_1027 at 1060.460 kb on + strand, within Dsui_1027 at 1060.460 kb on + strand, within Dsui_1027 at 1060.465 kb on + strand, within Dsui_1027 at 1060.551 kb on + strand, within Dsui_1027 at 1060.559 kb on - strand at 1060.767 kb on - strand at 1060.767 kb on - strand at 1061.638 kb on - strand at 1061.717 kb on + strand at 1061.725 kb on - strand at 1061.764 kb on + strand at 1061.884 kb on - strand, within Dsui_1030 at 1061.947 kb on - strand, within Dsui_1030 at 1061.983 kb on - strand, within Dsui_1030 at 1062.008 kb on - strand, within Dsui_1030 at 1062.060 kb on + strand, within Dsui_1030 at 1062.060 kb on + strand, within Dsui_1030 at 1062.068 kb on - strand, within Dsui_1030 at 1062.085 kb on - strand, within Dsui_1030 at 1062.153 kb on + strand, within Dsui_1030 at 1062.161 kb on - strand, within Dsui_1030 at 1062.237 kb on + strand, within Dsui_1030 at 1062.299 kb on - strand, within Dsui_1030 at 1062.322 kb on - strand, within Dsui_1030 at 1062.325 kb on + strand, within Dsui_1030 at 1062.356 kb on + strand, within Dsui_1030 at 1062.356 kb on + strand, within Dsui_1030 at 1062.356 kb on + strand, within Dsui_1030 at 1062.364 kb on - strand, within Dsui_1030 at 1062.368 kb on + strand, within Dsui_1030 at 1062.389 kb on + strand, within Dsui_1030 at 1062.389 kb on + strand, within Dsui_1030 at 1062.402 kb on - strand, within Dsui_1030 at 1062.440 kb on - strand, within Dsui_1030 at 1062.497 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 1,060,328 - +0.6 1,060,372 - Dsui_1027 0.33 -1.0 1,060,407 + Dsui_1027 0.39 -1.0 1,060,460 + Dsui_1027 0.47 -0.7 1,060,460 + Dsui_1027 0.47 -0.6 1,060,465 + Dsui_1027 0.48 -0.1 1,060,551 + Dsui_1027 0.62 -0.0 1,060,559 - -1.4 1,060,767 - +0.6 1,060,767 - -1.0 1,061,638 - +0.0 1,061,717 + -0.2 1,061,725 - +0.3 1,061,764 + +0.4 1,061,884 - Dsui_1030 0.13 +0.2 1,061,947 - Dsui_1030 0.17 +0.5 1,061,983 - Dsui_1030 0.19 +0.2 1,062,008 - Dsui_1030 0.20 +0.6 1,062,060 + Dsui_1030 0.22 +2.6 1,062,060 + Dsui_1030 0.22 -1.4 1,062,068 - Dsui_1030 0.23 +0.3 1,062,085 - Dsui_1030 0.24 +0.9 1,062,153 + Dsui_1030 0.27 -0.1 1,062,161 - Dsui_1030 0.28 +0.3 1,062,237 + Dsui_1030 0.32 +0.6 1,062,299 - Dsui_1030 0.35 -0.2 1,062,322 - Dsui_1030 0.36 +0.8 1,062,325 + Dsui_1030 0.36 -0.4 1,062,356 + Dsui_1030 0.38 -2.0 1,062,356 + Dsui_1030 0.38 +0.6 1,062,356 + Dsui_1030 0.38 -1.4 1,062,364 - Dsui_1030 0.38 +0.7 1,062,368 + Dsui_1030 0.38 +0.2 1,062,389 + Dsui_1030 0.39 +0.6 1,062,389 + Dsui_1030 0.39 +1.1 1,062,402 - Dsui_1030 0.40 -0.0 1,062,440 - Dsui_1030 0.42 -0.4 1,062,497 + +0.6
Or see this region's nucleotide sequence