Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1024 and Dsui_1025 are separated by 170 nucleotides Dsui_1025 and Dsui_1026 are separated by 14 nucleotides
Dsui_1024: Dsui_1024 - signal recognition particle-docking protein FtsY, at 1,056,323 to 1,057,327
_1024
Dsui_1025: Dsui_1025 - putative Zn-dependent peptidase, at 1,057,498 to 1,058,865
_1025
Dsui_1026: Dsui_1026 - putative Zn-dependent peptidase, at 1,058,880 to 1,060,172
_1026
Position (kb)
1057
1058
1059 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1057.377 kb on - strand at 1057.381 kb on - strand at 1057.595 kb on + strand at 1057.652 kb on + strand, within Dsui_1025 at 1057.652 kb on + strand, within Dsui_1025 at 1057.942 kb on + strand, within Dsui_1025 at 1057.983 kb on + strand, within Dsui_1025 at 1058.020 kb on + strand, within Dsui_1025 at 1058.072 kb on + strand, within Dsui_1025 at 1058.072 kb on - strand, within Dsui_1025 at 1058.126 kb on + strand, within Dsui_1025 at 1058.228 kb on - strand at 1058.291 kb on - strand, within Dsui_1025 at 1058.317 kb on - strand, within Dsui_1025 at 1058.343 kb on + strand, within Dsui_1025 at 1058.379 kb on - strand at 1058.420 kb on - strand at 1058.426 kb on - strand at 1058.699 kb on + strand, within Dsui_1025 at 1058.785 kb on + strand at 1058.800 kb on - strand at 1058.936 kb on + strand at 1058.959 kb on + strand at 1059.088 kb on + strand, within Dsui_1026 at 1059.199 kb on + strand, within Dsui_1026 at 1059.302 kb on - strand at 1059.479 kb on + strand, within Dsui_1026 at 1059.533 kb on + strand, within Dsui_1026 at 1059.534 kb on + strand, within Dsui_1026 at 1059.693 kb on + strand, within Dsui_1026 at 1059.780 kb on + strand at 1059.788 kb on - strand at 1059.810 kb on - strand, within Dsui_1026
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 1,057,377 - +2.2 1,057,381 - -0.8 1,057,595 + -1.2 1,057,652 + Dsui_1025 0.11 -2.2 1,057,652 + Dsui_1025 0.11 -2.1 1,057,942 + Dsui_1025 0.32 -2.2 1,057,983 + Dsui_1025 0.35 -2.4 1,058,020 + Dsui_1025 0.38 -3.1 1,058,072 + Dsui_1025 0.42 -1.4 1,058,072 - Dsui_1025 0.42 +0.6 1,058,126 + Dsui_1025 0.46 -3.3 1,058,228 - -1.0 1,058,291 - Dsui_1025 0.58 -0.4 1,058,317 - Dsui_1025 0.60 +0.6 1,058,343 + Dsui_1025 0.62 -1.8 1,058,379 - +0.6 1,058,420 - -1.0 1,058,426 - +0.6 1,058,699 + Dsui_1025 0.88 -2.1 1,058,785 + -3.9 1,058,800 - +0.6 1,058,936 + -4.0 1,058,959 + -2.9 1,059,088 + Dsui_1026 0.16 -3.8 1,059,199 + Dsui_1026 0.25 -2.8 1,059,302 - +0.6 1,059,479 + Dsui_1026 0.46 -3.7 1,059,533 + Dsui_1026 0.51 -4.4 1,059,534 + Dsui_1026 0.51 -2.2 1,059,693 + Dsui_1026 0.63 -2.1 1,059,780 + +0.6 1,059,788 - -0.4 1,059,810 - Dsui_1026 0.72 -2.0
Or see this region's nucleotide sequence