Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0995 and Dsui_0996 are separated by 75 nucleotides Dsui_0996 and Dsui_0997 are separated by 366 nucleotides
Dsui_0995: Dsui_0995 - arabinose efflux permease family protein, at 1,020,976 to 1,022,196
_0995
Dsui_0996: Dsui_0996 - soluble lytic murein transglycosylase-like protein, at 1,022,272 to 1,022,979
_0996
Dsui_0997: Dsui_0997 - methyl-accepting chemotaxis protein, at 1,023,346 to 1,025,373
_0997
Position (kb)
1022
1023 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1021.389 kb on + strand, within Dsui_0995 at 1021.476 kb on - strand, within Dsui_0995 at 1021.640 kb on + strand, within Dsui_0995 at 1021.648 kb on - strand, within Dsui_0995 at 1021.648 kb on - strand at 1021.696 kb on - strand at 1021.811 kb on - strand, within Dsui_0995 at 1021.971 kb on - strand, within Dsui_0995 at 1022.011 kb on + strand, within Dsui_0995 at 1022.050 kb on + strand, within Dsui_0995 at 1022.123 kb on + strand at 1022.131 kb on - strand at 1022.159 kb on - strand at 1022.185 kb on + strand at 1022.239 kb on + strand at 1022.339 kb on + strand at 1022.344 kb on + strand, within Dsui_0996 at 1022.552 kb on + strand, within Dsui_0996 at 1022.643 kb on - strand, within Dsui_0996 at 1022.701 kb on + strand, within Dsui_0996 at 1022.701 kb on + strand, within Dsui_0996 at 1022.709 kb on - strand, within Dsui_0996 at 1022.901 kb on + strand, within Dsui_0996 at 1022.906 kb on + strand, within Dsui_0996 at 1022.909 kb on - strand at 1022.919 kb on - strand at 1023.015 kb on + strand at 1023.034 kb on - strand at 1023.121 kb on + strand at 1023.131 kb on + strand at 1023.132 kb on + strand at 1023.133 kb on + strand at 1023.141 kb on - strand at 1023.232 kb on + strand at 1023.232 kb on + strand at 1023.240 kb on - strand at 1023.341 kb on - strand at 1023.352 kb on - strand at 1023.392 kb on + strand at 1023.416 kb on + strand at 1023.424 kb on - strand at 1023.494 kb on + strand at 1023.502 kb on - strand at 1023.504 kb on + strand at 1023.651 kb on - strand, within Dsui_0997 at 1023.655 kb on + strand, within Dsui_0997 at 1023.663 kb on - strand, within Dsui_0997 at 1023.725 kb on - strand, within Dsui_0997 at 1023.963 kb on + strand, within Dsui_0997
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 1,021,389 + Dsui_0995 0.34 -0.5 1,021,476 - Dsui_0995 0.41 -0.8 1,021,640 + Dsui_0995 0.54 -0.5 1,021,648 - Dsui_0995 0.55 +0.0 1,021,648 - +1.2 1,021,696 - +1.3 1,021,811 - Dsui_0995 0.68 +1.2 1,021,971 - Dsui_0995 0.81 -0.2 1,022,011 + Dsui_0995 0.85 -0.1 1,022,050 + Dsui_0995 0.88 -0.6 1,022,123 + +0.3 1,022,131 - -0.6 1,022,159 - +0.3 1,022,185 + +0.2 1,022,239 + +0.7 1,022,339 + +0.6 1,022,344 + Dsui_0996 0.10 -1.9 1,022,552 + Dsui_0996 0.40 +0.6 1,022,643 - Dsui_0996 0.52 +0.0 1,022,701 + Dsui_0996 0.61 +1.9 1,022,701 + Dsui_0996 0.61 -2.9 1,022,709 - Dsui_0996 0.62 -0.7 1,022,901 + Dsui_0996 0.89 +0.6 1,022,906 + Dsui_0996 0.90 +0.6 1,022,909 - +0.4 1,022,919 - -0.1 1,023,015 + -0.4 1,023,034 - -0.1 1,023,121 + -2.0 1,023,131 + -1.4 1,023,132 + -2.0 1,023,133 + -2.4 1,023,141 - -0.3 1,023,232 + -1.0 1,023,232 + +0.6 1,023,240 - +0.6 1,023,341 - -1.1 1,023,352 - +0.6 1,023,392 + -3.4 1,023,416 + +0.6 1,023,424 - -1.7 1,023,494 + -1.4 1,023,502 - +0.5 1,023,504 + -0.4 1,023,651 - Dsui_0997 0.15 +1.1 1,023,655 + Dsui_0997 0.15 +0.6 1,023,663 - Dsui_0997 0.16 -0.6 1,023,725 - Dsui_0997 0.19 +0.4 1,023,963 + Dsui_0997 0.30 -0.4
Or see this region's nucleotide sequence