Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0972 and Dsui_0973 are separated by 236 nucleotides Dsui_0973 and Dsui_0974 are separated by 85 nucleotides Dsui_0974 and Dsui_0975 are separated by 150 nucleotides
Dsui_0972: Dsui_0972 - Zn-dependent hydrolase, glyoxylase, at 998,688 to 999,722
_0972
Dsui_0973: Dsui_0973 - putative transcriptional regulator, at 999,959 to 1,000,429
_0973
Dsui_0974: Dsui_0974 - hypothetical protein, at 1,000,515 to 1,000,979
_0974
Dsui_0975: Dsui_0975 - acyl-CoA dehydrogenase, at 1,001,130 to 1,002,302
_0975
Position (kb) 999
1000
1001 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 999.104 kb on - strand, within Dsui_0972 at 999.141 kb on - strand, within Dsui_0972 at 999.141 kb on - strand, within Dsui_0972 at 999.172 kb on + strand, within Dsui_0972 at 999.208 kb on - strand, within Dsui_0972 at 999.281 kb on + strand, within Dsui_0972 at 999.305 kb on + strand, within Dsui_0972 at 999.333 kb on - strand, within Dsui_0972 at 999.411 kb on - strand, within Dsui_0972 at 999.431 kb on + strand, within Dsui_0972 at 999.508 kb on - strand, within Dsui_0972 at 999.510 kb on + strand, within Dsui_0972 at 999.632 kb on - strand at 999.635 kb on + strand at 999.643 kb on - strand at 999.662 kb on + strand at 999.670 kb on - strand at 999.676 kb on - strand at 999.724 kb on + strand at 999.728 kb on + strand at 999.728 kb on + strand at 999.728 kb on + strand at 999.736 kb on - strand at 999.811 kb on + strand at 999.834 kb on - strand at 999.899 kb on + strand at 999.989 kb on + strand at 1000.006 kb on - strand, within Dsui_0973 at 1000.031 kb on - strand at 1000.046 kb on - strand, within Dsui_0973 at 1000.069 kb on + strand, within Dsui_0973 at 1000.119 kb on - strand, within Dsui_0973 at 1000.119 kb on - strand, within Dsui_0973 at 1000.172 kb on - strand, within Dsui_0973 at 1000.230 kb on - strand, within Dsui_0973 at 1000.308 kb on - strand, within Dsui_0973 at 1000.363 kb on + strand, within Dsui_0973 at 1000.383 kb on - strand at 1000.682 kb on + strand, within Dsui_0974 at 1000.806 kb on + strand, within Dsui_0974 at 1000.904 kb on + strand, within Dsui_0974 at 1000.919 kb on - strand, within Dsui_0974 at 1000.974 kb on + strand at 1000.982 kb on - strand at 1001.049 kb on - strand at 1001.049 kb on - strand at 1001.049 kb on - strand at 1001.069 kb on + strand at 1001.083 kb on + strand at 1001.091 kb on - strand at 1001.101 kb on - strand at 1001.151 kb on - strand at 1001.180 kb on + strand at 1001.213 kb on - strand at 1001.234 kb on + strand at 1001.331 kb on + strand, within Dsui_0975 at 1001.331 kb on + strand, within Dsui_0975 at 1001.339 kb on - strand at 1001.351 kb on + strand, within Dsui_0975 at 1001.421 kb on - strand, within Dsui_0975
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 999,104 - Dsui_0972 0.40 +0.7 999,141 - Dsui_0972 0.44 -1.0 999,141 - Dsui_0972 0.44 +0.1 999,172 + Dsui_0972 0.47 -1.0 999,208 - Dsui_0972 0.50 -0.1 999,281 + Dsui_0972 0.57 +0.6 999,305 + Dsui_0972 0.60 -1.0 999,333 - Dsui_0972 0.62 -0.4 999,411 - Dsui_0972 0.70 +1.4 999,431 + Dsui_0972 0.72 +0.6 999,508 - Dsui_0972 0.79 -1.0 999,510 + Dsui_0972 0.79 -0.4 999,632 - +2.6 999,635 + +0.6 999,643 - +3.2 999,662 + +0.6 999,670 - +1.2 999,676 - -0.4 999,724 + +0.2 999,728 + -1.4 999,728 + +0.6 999,728 + -0.4 999,736 - -0.4 999,811 + -3.0 999,834 - +0.6 999,899 + +1.6 999,989 + +0.4 1,000,006 - Dsui_0973 0.10 -0.4 1,000,031 - +0.6 1,000,046 - Dsui_0973 0.18 -1.8 1,000,069 + Dsui_0973 0.23 +1.0 1,000,119 - Dsui_0973 0.34 +0.6 1,000,119 - Dsui_0973 0.34 -1.4 1,000,172 - Dsui_0973 0.45 +0.6 1,000,230 - Dsui_0973 0.58 -1.4 1,000,308 - Dsui_0973 0.74 -1.0 1,000,363 + Dsui_0973 0.86 +0.1 1,000,383 - +0.6 1,000,682 + Dsui_0974 0.36 -1.8 1,000,806 + Dsui_0974 0.63 -0.4 1,000,904 + Dsui_0974 0.84 -1.4 1,000,919 - Dsui_0974 0.87 -0.4 1,000,974 + -1.0 1,000,982 - +0.6 1,001,049 - +0.6 1,001,049 - +0.6 1,001,049 - -0.4 1,001,069 + -1.4 1,001,083 + -1.0 1,001,091 - -1.0 1,001,101 - -0.4 1,001,151 - +0.6 1,001,180 + -1.0 1,001,213 - -1.0 1,001,234 + -0.4 1,001,331 + Dsui_0975 0.17 -1.4 1,001,331 + Dsui_0975 0.17 -1.4 1,001,339 - +0.6 1,001,351 + Dsui_0975 0.19 -2.0 1,001,421 - Dsui_0975 0.25 +0.6
Or see this region's nucleotide sequence