Strain Fitness in Dechlorosoma suillum PS around Dsui_0863

Experiment: ALP with Fusidic 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0861 and Dsui_0862 are separated by 40 nucleotidesDsui_0862 and Dsui_0863 are separated by 154 nucleotidesDsui_0863 and Dsui_0864 are separated by 40 nucleotides Dsui_0861: Dsui_0861 - ubiquinone/menaquinone biosynthesis methyltransferase, at 876,214 to 876,948 _0861 Dsui_0862: Dsui_0862 - hypothetical protein, at 876,989 to 877,414 _0862 Dsui_0863: Dsui_0863 - phosphate regulon transcriptional regulatory protein PhoB, at 877,569 to 878,261 _0863 Dsui_0864: Dsui_0864 - phosphate regulon sensor kinase PhoR, at 878,302 to 879,603 _0864 Position (kb) 877 878 879Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 876.995 kb on - strandat 876.995 kb on - strandat 876.995 kb on - strandat 877.090 kb on + strand, within Dsui_0862at 877.120 kb on + strandat 877.164 kb on + strand, within Dsui_0862at 877.286 kb on - strand, within Dsui_0862at 877.412 kb on - strandat 877.424 kb on - strandat 877.442 kb on + strandat 877.463 kb on - strandat 877.463 kb on - strandat 877.463 kb on - strandat 877.463 kb on - strandat 877.466 kb on + strandat 877.481 kb on - strandat 877.528 kb on + strandat 877.532 kb on - strandat 877.548 kb on + strandat 877.548 kb on + strandat 877.548 kb on + strandat 877.548 kb on + strandat 877.556 kb on - strandat 877.558 kb on + strandat 877.572 kb on - strandat 877.575 kb on + strandat 877.591 kb on + strandat 877.602 kb on + strandat 877.610 kb on - strandat 877.645 kb on + strand, within Dsui_0863at 877.649 kb on - strand, within Dsui_0863at 877.716 kb on + strand, within Dsui_0863at 877.787 kb on + strand, within Dsui_0863at 877.812 kb on - strandat 877.850 kb on + strand, within Dsui_0863at 877.850 kb on + strand, within Dsui_0863at 877.913 kb on + strand, within Dsui_0863at 877.915 kb on - strand, within Dsui_0863at 877.918 kb on + strand, within Dsui_0863at 877.931 kb on - strandat 877.950 kb on + strand, within Dsui_0863at 878.038 kb on - strand, within Dsui_0863at 878.045 kb on + strand, within Dsui_0863at 878.114 kb on + strand, within Dsui_0863at 878.114 kb on + strand, within Dsui_0863at 878.122 kb on - strand, within Dsui_0863at 878.122 kb on - strand, within Dsui_0863at 878.157 kb on + strand, within Dsui_0863at 878.157 kb on - strandat 878.189 kb on - strand, within Dsui_0863at 878.210 kb on + strandat 878.228 kb on - strandat 878.312 kb on - strandat 878.346 kb on + strandat 878.358 kb on + strandat 878.424 kb on + strandat 878.432 kb on - strandat 878.468 kb on - strandat 878.536 kb on + strand, within Dsui_0864at 878.633 kb on + strand, within Dsui_0864at 878.699 kb on + strand, within Dsui_0864at 878.777 kb on - strand, within Dsui_0864at 878.817 kb on + strand, within Dsui_0864at 878.824 kb on + strand, within Dsui_0864at 878.824 kb on + strand, within Dsui_0864at 878.872 kb on - strand, within Dsui_0864at 878.872 kb on - strand, within Dsui_0864at 878.891 kb on + strand, within Dsui_0864at 878.906 kb on - strand, within Dsui_0864at 878.962 kb on + strand, within Dsui_0864at 879.041 kb on + strand, within Dsui_0864at 879.042 kb on - strand, within Dsui_0864at 879.049 kb on - strand, within Dsui_0864at 879.061 kb on + strand, within Dsui_0864at 879.071 kb on - strand, within Dsui_0864at 879.071 kb on - strand, within Dsui_0864at 879.086 kb on + strand, within Dsui_0864at 879.178 kb on - strand, within Dsui_0864at 879.195 kb on - strandat 879.200 kb on + strand, within Dsui_0864at 879.260 kb on + strand, within Dsui_0864

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml
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876,995 - +0.2
876,995 - +1.6
876,995 - +1.0
877,090 + Dsui_0862 0.24 -0.6
877,120 + +1.4
877,164 + Dsui_0862 0.41 -0.6
877,286 - Dsui_0862 0.70 +1.3
877,412 - +3.2
877,424 - +1.1
877,442 + -0.6
877,463 - -1.1
877,463 - -0.6
877,463 - -0.6
877,463 - -0.6
877,466 + -1.9
877,481 - -1.1
877,528 + +0.8
877,532 - -0.6
877,548 + -1.9
877,548 + +0.5
877,548 + -0.4
877,548 + +1.4
877,556 - +0.4
877,558 + -0.1
877,572 - -2.6
877,575 + -0.7
877,591 + +2.0
877,602 + +0.3
877,610 - -0.6
877,645 + Dsui_0863 0.11 +0.8
877,649 - Dsui_0863 0.12 -0.6
877,716 + Dsui_0863 0.21 -0.1
877,787 + Dsui_0863 0.31 +0.2
877,812 - +0.4
877,850 + Dsui_0863 0.41 +1.3
877,850 + Dsui_0863 0.41 -0.8
877,913 + Dsui_0863 0.50 -0.6
877,915 - Dsui_0863 0.50 -1.1
877,918 + Dsui_0863 0.50 +0.0
877,931 - -0.6
877,950 + Dsui_0863 0.55 +0.4
878,038 - Dsui_0863 0.68 -0.2
878,045 + Dsui_0863 0.69 +0.8
878,114 + Dsui_0863 0.79 +0.6
878,114 + Dsui_0863 0.79 -0.6
878,122 - Dsui_0863 0.80 -0.6
878,122 - Dsui_0863 0.80 +0.4
878,157 + Dsui_0863 0.85 -0.7
878,157 - -0.6
878,189 - Dsui_0863 0.89 -1.6
878,210 + -1.3
878,228 - -0.6
878,312 - +0.4
878,346 + +0.5
878,358 + +1.6
878,424 + -0.2
878,432 - +0.4
878,468 - -1.1
878,536 + Dsui_0864 0.18 -0.6
878,633 + Dsui_0864 0.25 +0.6
878,699 + Dsui_0864 0.30 -2.2
878,777 - Dsui_0864 0.36 -0.6
878,817 + Dsui_0864 0.40 -0.6
878,824 + Dsui_0864 0.40 -2.0
878,824 + Dsui_0864 0.40 -1.1
878,872 - Dsui_0864 0.44 -1.1
878,872 - Dsui_0864 0.44 -2.6
878,891 + Dsui_0864 0.45 -0.1
878,906 - Dsui_0864 0.46 +0.4
878,962 + Dsui_0864 0.51 +0.2
879,041 + Dsui_0864 0.57 -1.0
879,042 - Dsui_0864 0.57 -0.6
879,049 - Dsui_0864 0.57 -2.4
879,061 + Dsui_0864 0.58 +0.2
879,071 - Dsui_0864 0.59 -3.5
879,071 - Dsui_0864 0.59 +0.4
879,086 + Dsui_0864 0.60 +0.7
879,178 - Dsui_0864 0.67 -0.6
879,195 - +0.4
879,200 + Dsui_0864 0.69 -0.0
879,260 + Dsui_0864 0.74 -0.4

Or see this region's nucleotide sequence