Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0859 and Dsui_0860 are separated by 5 nucleotides Dsui_0860 and Dsui_0861 are separated by 33 nucleotides Dsui_0861 and Dsui_0862 are separated by 40 nucleotides Dsui_0862 and Dsui_0863 are separated by 154 nucleotides
Dsui_0859: Dsui_0859 - hypothetical protein, at 874,688 to 875,263
_0859
Dsui_0860: Dsui_0860 - hypothetical protein, at 875,269 to 876,180
_0860
Dsui_0861: Dsui_0861 - ubiquinone/menaquinone biosynthesis methyltransferase, at 876,214 to 876,948
_0861
Dsui_0862: Dsui_0862 - hypothetical protein, at 876,989 to 877,414
_0862
Dsui_0863: Dsui_0863 - phosphate regulon transcriptional regulatory protein PhoB, at 877,569 to 878,261
_0863
Position (kb) 876
877 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 875.267 kb on + strand at 875.321 kb on + strand at 875.375 kb on + strand, within Dsui_0860 at 875.447 kb on + strand, within Dsui_0860 at 875.563 kb on - strand, within Dsui_0860 at 875.591 kb on + strand at 875.599 kb on - strand, within Dsui_0860 at 875.652 kb on - strand, within Dsui_0860 at 875.866 kb on - strand, within Dsui_0860 at 876.133 kb on + strand at 876.154 kb on + strand at 876.164 kb on + strand at 876.164 kb on + strand at 876.995 kb on - strand at 876.995 kb on - strand at 876.995 kb on - strand at 877.090 kb on + strand, within Dsui_0862 at 877.120 kb on + strand at 877.164 kb on + strand, within Dsui_0862 at 877.286 kb on - strand, within Dsui_0862 at 877.412 kb on - strand at 877.424 kb on - strand at 877.442 kb on + strand at 877.463 kb on - strand at 877.463 kb on - strand at 877.463 kb on - strand at 877.463 kb on - strand at 877.466 kb on + strand at 877.481 kb on - strand at 877.528 kb on + strand at 877.532 kb on - strand at 877.548 kb on + strand at 877.548 kb on + strand at 877.548 kb on + strand at 877.548 kb on + strand at 877.556 kb on - strand at 877.558 kb on + strand at 877.572 kb on - strand at 877.575 kb on + strand at 877.591 kb on + strand at 877.602 kb on + strand at 877.610 kb on - strand at 877.645 kb on + strand, within Dsui_0863 at 877.649 kb on - strand, within Dsui_0863 at 877.716 kb on + strand, within Dsui_0863 at 877.787 kb on + strand, within Dsui_0863 at 877.812 kb on - strand at 877.850 kb on + strand, within Dsui_0863 at 877.850 kb on + strand, within Dsui_0863 at 877.913 kb on + strand, within Dsui_0863 at 877.915 kb on - strand, within Dsui_0863 at 877.918 kb on + strand, within Dsui_0863 at 877.931 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 875,267 + +2.3 875,321 + -1.1 875,375 + Dsui_0860 0.12 +0.4 875,447 + Dsui_0860 0.20 -1.1 875,563 - Dsui_0860 0.32 +0.1 875,591 + -0.6 875,599 - Dsui_0860 0.36 +0.3 875,652 - Dsui_0860 0.42 +0.7 875,866 - Dsui_0860 0.65 +0.5 876,133 + -0.6 876,154 + +0.4 876,164 + +0.4 876,164 + -2.1 876,995 - +0.2 876,995 - +1.6 876,995 - +1.0 877,090 + Dsui_0862 0.24 -0.6 877,120 + +1.4 877,164 + Dsui_0862 0.41 -0.6 877,286 - Dsui_0862 0.70 +1.3 877,412 - +3.2 877,424 - +1.1 877,442 + -0.6 877,463 - -1.1 877,463 - -0.6 877,463 - -0.6 877,463 - -0.6 877,466 + -1.9 877,481 - -1.1 877,528 + +0.8 877,532 - -0.6 877,548 + -1.9 877,548 + +0.5 877,548 + -0.4 877,548 + +1.4 877,556 - +0.4 877,558 + -0.1 877,572 - -2.6 877,575 + -0.7 877,591 + +2.0 877,602 + +0.3 877,610 - -0.6 877,645 + Dsui_0863 0.11 +0.8 877,649 - Dsui_0863 0.12 -0.6 877,716 + Dsui_0863 0.21 -0.1 877,787 + Dsui_0863 0.31 +0.2 877,812 - +0.4 877,850 + Dsui_0863 0.41 +1.3 877,850 + Dsui_0863 0.41 -0.8 877,913 + Dsui_0863 0.50 -0.6 877,915 - Dsui_0863 0.50 -1.1 877,918 + Dsui_0863 0.50 +0.0 877,931 - -0.6
Or see this region's nucleotide sequence