Strain Fitness in Dechlorosoma suillum PS around Dsui_0844

Experiment: ALP with Fusidic 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0843 and Dsui_0844 are separated by 79 nucleotidesDsui_0844 and Dsui_0845 are separated by 123 nucleotides Dsui_0843: Dsui_0843 - branched-chain amino acid ABC-type transport system, permease component, at 858,890 to 859,939 _0843 Dsui_0844: Dsui_0844 - ABC-type branched-chain amino acid transport system, periplasmic component, at 860,019 to 861,173 _0844 Dsui_0845: Dsui_0845 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 861,297 to 862,994 _0845 Position (kb) 860 861 862Strain fitness (log2 ratio) -3 -2 -1 0 1at 859.215 kb on + strand, within Dsui_0843at 859.260 kb on + strand, within Dsui_0843at 859.265 kb on + strand, within Dsui_0843at 859.265 kb on + strand, within Dsui_0843at 859.265 kb on + strand, within Dsui_0843at 859.265 kb on + strand, within Dsui_0843at 859.265 kb on + strand, within Dsui_0843at 859.265 kb on + strand, within Dsui_0843at 859.266 kb on - strand, within Dsui_0843at 859.268 kb on - strand, within Dsui_0843at 859.273 kb on - strand, within Dsui_0843at 859.273 kb on - strand, within Dsui_0843at 859.273 kb on - strand, within Dsui_0843at 859.346 kb on - strand, within Dsui_0843at 859.397 kb on + strand, within Dsui_0843at 859.426 kb on + strand, within Dsui_0843at 859.515 kb on + strand, within Dsui_0843at 859.586 kb on + strand, within Dsui_0843at 859.637 kb on - strand, within Dsui_0843at 859.696 kb on - strand, within Dsui_0843at 859.696 kb on - strand, within Dsui_0843at 859.714 kb on + strand, within Dsui_0843at 859.722 kb on - strand, within Dsui_0843at 859.744 kb on + strand, within Dsui_0843at 859.752 kb on - strand, within Dsui_0843at 859.786 kb on + strand, within Dsui_0843at 859.786 kb on + strand, within Dsui_0843at 859.794 kb on - strand, within Dsui_0843at 859.795 kb on - strand, within Dsui_0843at 859.861 kb on + strandat 859.861 kb on + strandat 859.959 kb on + strandat 859.967 kb on - strandat 859.969 kb on - strandat 860.000 kb on - strandat 860.030 kb on + strandat 860.038 kb on - strandat 860.075 kb on + strandat 860.157 kb on + strand, within Dsui_0844at 860.177 kb on + strand, within Dsui_0844at 860.188 kb on + strand, within Dsui_0844at 860.196 kb on - strand, within Dsui_0844at 860.199 kb on + strand, within Dsui_0844at 860.240 kb on + strand, within Dsui_0844at 860.248 kb on - strand, within Dsui_0844at 860.283 kb on + strand, within Dsui_0844at 860.290 kb on + strand, within Dsui_0844at 860.317 kb on - strand, within Dsui_0844at 860.399 kb on - strand, within Dsui_0844at 860.467 kb on + strand, within Dsui_0844at 860.475 kb on - strand, within Dsui_0844at 860.567 kb on - strand, within Dsui_0844at 860.653 kb on + strand, within Dsui_0844at 860.709 kb on + strand, within Dsui_0844at 860.768 kb on + strand, within Dsui_0844at 860.956 kb on - strand, within Dsui_0844at 860.961 kb on - strand, within Dsui_0844at 861.001 kb on - strand, within Dsui_0844at 861.010 kb on + strand, within Dsui_0844at 861.010 kb on + strand, within Dsui_0844at 861.018 kb on - strand, within Dsui_0844at 861.031 kb on - strand, within Dsui_0844at 861.116 kb on - strandat 861.116 kb on - strandat 861.223 kb on + strandat 861.228 kb on + strandat 861.231 kb on - strandat 861.253 kb on - strandat 861.278 kb on - strandat 861.278 kb on - strandat 861.307 kb on + strandat 861.307 kb on + strandat 861.385 kb on - strandat 861.409 kb on - strandat 861.419 kb on - strandat 861.453 kb on - strandat 861.469 kb on - strandat 861.475 kb on - strand, within Dsui_0845at 861.531 kb on + strand, within Dsui_0845at 861.536 kb on + strand, within Dsui_0845at 861.602 kb on + strand, within Dsui_0845at 861.610 kb on - strand, within Dsui_0845at 861.610 kb on - strand, within Dsui_0845at 861.613 kb on + strand, within Dsui_0845at 861.615 kb on + strand, within Dsui_0845at 861.631 kb on - strand, within Dsui_0845at 861.664 kb on + strand, within Dsui_0845at 861.664 kb on + strand, within Dsui_0845at 861.664 kb on + strand, within Dsui_0845at 861.672 kb on - strand, within Dsui_0845at 861.683 kb on - strand, within Dsui_0845at 861.770 kb on - strand, within Dsui_0845at 861.773 kb on + strand, within Dsui_0845at 861.787 kb on - strand, within Dsui_0845at 861.787 kb on - strand, within Dsui_0845at 861.787 kb on - strand, within Dsui_0845at 861.814 kb on + strand, within Dsui_0845at 861.822 kb on - strand, within Dsui_0845at 861.830 kb on + strand, within Dsui_0845at 861.848 kb on - strand, within Dsui_0845at 861.894 kb on - strand, within Dsui_0845at 861.905 kb on - strand, within Dsui_0845at 861.905 kb on - strand, within Dsui_0845at 861.935 kb on - strand, within Dsui_0845at 861.968 kb on + strand, within Dsui_0845at 862.016 kb on - strand, within Dsui_0845at 862.026 kb on - strand, within Dsui_0845at 862.065 kb on - strand, within Dsui_0845at 862.080 kb on - strand, within Dsui_0845at 862.114 kb on - strand, within Dsui_0845at 862.135 kb on - strand, within Dsui_0845

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml
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859,215 + Dsui_0843 0.31 -1.6
859,260 + Dsui_0843 0.35 -0.6
859,265 + Dsui_0843 0.36 -0.6
859,265 + Dsui_0843 0.36 -2.1
859,265 + Dsui_0843 0.36 -0.6
859,265 + Dsui_0843 0.36 +1.4
859,265 + Dsui_0843 0.36 -0.2
859,265 + Dsui_0843 0.36 -1.7
859,266 - Dsui_0843 0.36 -0.8
859,268 - Dsui_0843 0.36 -0.8
859,273 - Dsui_0843 0.36 -0.5
859,273 - Dsui_0843 0.36 -0.8
859,273 - Dsui_0843 0.36 -1.4
859,346 - Dsui_0843 0.43 -0.9
859,397 + Dsui_0843 0.48 -1.1
859,426 + Dsui_0843 0.51 -0.6
859,515 + Dsui_0843 0.60 +0.1
859,586 + Dsui_0843 0.66 -0.9
859,637 - Dsui_0843 0.71 -0.5
859,696 - Dsui_0843 0.77 -0.4
859,696 - Dsui_0843 0.77 -0.9
859,714 + Dsui_0843 0.78 +0.4
859,722 - Dsui_0843 0.79 -1.0
859,744 + Dsui_0843 0.81 -1.6
859,752 - Dsui_0843 0.82 -1.0
859,786 + Dsui_0843 0.85 +0.4
859,786 + Dsui_0843 0.85 -1.7
859,794 - Dsui_0843 0.86 -1.0
859,795 - Dsui_0843 0.86 -1.1
859,861 + +0.4
859,861 + +0.4
859,959 + -0.4
859,967 - -0.3
859,969 - -0.6
860,000 - -0.8
860,030 + -0.6
860,038 - -0.4
860,075 + -0.6
860,157 + Dsui_0844 0.12 +0.4
860,177 + Dsui_0844 0.14 -1.6
860,188 + Dsui_0844 0.15 -0.9
860,196 - Dsui_0844 0.15 -0.6
860,199 + Dsui_0844 0.16 -0.6
860,240 + Dsui_0844 0.19 -2.6
860,248 - Dsui_0844 0.20 -1.1
860,283 + Dsui_0844 0.23 -1.9
860,290 + Dsui_0844 0.23 -0.6
860,317 - Dsui_0844 0.26 -0.9
860,399 - Dsui_0844 0.33 -1.4
860,467 + Dsui_0844 0.39 -0.6
860,475 - Dsui_0844 0.39 -1.1
860,567 - Dsui_0844 0.47 -1.5
860,653 + Dsui_0844 0.55 -0.6
860,709 + Dsui_0844 0.60 +0.4
860,768 + Dsui_0844 0.65 +0.4
860,956 - Dsui_0844 0.81 -1.1
860,961 - Dsui_0844 0.82 -1.0
861,001 - Dsui_0844 0.85 -1.3
861,010 + Dsui_0844 0.86 -1.1
861,010 + Dsui_0844 0.86 -1.1
861,018 - Dsui_0844 0.86 -1.2
861,031 - Dsui_0844 0.88 -0.7
861,116 - -0.5
861,116 - -0.2
861,223 + +0.4
861,228 + -1.1
861,231 - -0.6
861,253 - -1.0
861,278 - +0.4
861,278 - +0.4
861,307 + +0.4
861,307 + +0.4
861,385 - +0.4
861,409 - -1.9
861,419 - +0.4
861,453 - -0.6
861,469 - +0.4
861,475 - Dsui_0845 0.10 +0.4
861,531 + Dsui_0845 0.14 +0.4
861,536 + Dsui_0845 0.14 +0.4
861,602 + Dsui_0845 0.18 -0.6
861,610 - Dsui_0845 0.18 -2.1
861,610 - Dsui_0845 0.18 -0.1
861,613 + Dsui_0845 0.19 +0.4
861,615 + Dsui_0845 0.19 +0.4
861,631 - Dsui_0845 0.20 +0.4
861,664 + Dsui_0845 0.22 +0.4
861,664 + Dsui_0845 0.22 -0.6
861,664 + Dsui_0845 0.22 -0.6
861,672 - Dsui_0845 0.22 +0.7
861,683 - Dsui_0845 0.23 -3.1
861,770 - Dsui_0845 0.28 -1.4
861,773 + Dsui_0845 0.28 -1.1
861,787 - Dsui_0845 0.29 +0.1
861,787 - Dsui_0845 0.29 +0.1
861,787 - Dsui_0845 0.29 -0.9
861,814 + Dsui_0845 0.30 -1.1
861,822 - Dsui_0845 0.31 +0.4
861,830 + Dsui_0845 0.31 +0.4
861,848 - Dsui_0845 0.32 -0.6
861,894 - Dsui_0845 0.35 -1.9
861,905 - Dsui_0845 0.36 +0.4
861,905 - Dsui_0845 0.36 -1.1
861,935 - Dsui_0845 0.38 +0.4
861,968 + Dsui_0845 0.40 +0.4
862,016 - Dsui_0845 0.42 -0.6
862,026 - Dsui_0845 0.43 +0.8
862,065 - Dsui_0845 0.45 -1.7
862,080 - Dsui_0845 0.46 +1.4
862,114 - Dsui_0845 0.48 -1.0
862,135 - Dsui_0845 0.49 -2.0

Or see this region's nucleotide sequence