Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0809 and Dsui_0810 are separated by 23 nucleotides Dsui_0810 and Dsui_0811 overlap by 4 nucleotides Dsui_0811 and Dsui_0812 overlap by 41 nucleotides
Dsui_0809: Dsui_0809 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 819,386 to 820,642
_0809
Dsui_0810: Dsui_0810 - signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation, at 820,666 to 822,786
_0810
Dsui_0811: Dsui_0811 - hypothetical protein, at 822,783 to 823,391
_0811
Dsui_0812: Dsui_0812 - ribosomal RNA small subunit methyltransferase RsmB, at 823,351 to 824,688
_0812
Position (kb) 820
821
822
823 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 820.675 kb on + strand at 821.337 kb on + strand, within Dsui_0810 at 821.598 kb on + strand, within Dsui_0810 at 821.663 kb on + strand, within Dsui_0810 at 821.663 kb on + strand, within Dsui_0810 at 821.690 kb on + strand, within Dsui_0810 at 821.722 kb on + strand, within Dsui_0810 at 821.722 kb on + strand, within Dsui_0810 at 821.782 kb on + strand, within Dsui_0810 at 821.806 kb on + strand, within Dsui_0810 at 821.847 kb on + strand, within Dsui_0810 at 821.963 kb on + strand, within Dsui_0810 at 822.000 kb on + strand, within Dsui_0810 at 822.137 kb on - strand, within Dsui_0810 at 822.159 kb on + strand, within Dsui_0810 at 822.167 kb on - strand, within Dsui_0810 at 822.182 kb on + strand, within Dsui_0810 at 822.260 kb on + strand, within Dsui_0810 at 822.368 kb on - strand, within Dsui_0810 at 822.408 kb on + strand, within Dsui_0810 at 822.686 kb on + strand at 822.686 kb on + strand at 822.694 kb on - strand at 822.759 kb on - strand at 822.795 kb on + strand at 822.806 kb on + strand at 822.870 kb on + strand, within Dsui_0811 at 822.892 kb on + strand, within Dsui_0811 at 822.892 kb on + strand, within Dsui_0811 at 822.902 kb on + strand, within Dsui_0811 at 822.911 kb on + strand, within Dsui_0811 at 822.952 kb on + strand, within Dsui_0811 at 822.952 kb on + strand, within Dsui_0811 at 822.970 kb on - strand, within Dsui_0811 at 822.980 kb on - strand, within Dsui_0811 at 823.027 kb on - strand, within Dsui_0811 at 823.054 kb on + strand, within Dsui_0811 at 823.065 kb on + strand, within Dsui_0811 at 823.189 kb on + strand, within Dsui_0811 at 823.255 kb on - strand, within Dsui_0811 at 823.256 kb on - strand, within Dsui_0811 at 823.282 kb on - strand, within Dsui_0811 at 823.282 kb on - strand, within Dsui_0811 at 823.297 kb on - strand, within Dsui_0811 at 823.356 kb on - strand at 823.379 kb on - strand at 823.379 kb on - strand at 823.379 kb on - strand at 823.392 kb on - strand at 823.400 kb on - strand at 823.403 kb on + strand at 823.467 kb on + strand at 823.479 kb on + strand at 823.479 kb on + strand at 823.487 kb on - strand, within Dsui_0812 at 823.522 kb on + strand, within Dsui_0812 at 823.525 kb on - strand, within Dsui_0812 at 823.539 kb on + strand, within Dsui_0812 at 823.578 kb on - strand, within Dsui_0812 at 823.685 kb on - strand, within Dsui_0812 at 823.706 kb on - strand, within Dsui_0812 at 823.708 kb on - strand, within Dsui_0812 at 823.723 kb on + strand, within Dsui_0812 at 823.752 kb on + strand, within Dsui_0812 at 823.752 kb on + strand, within Dsui_0812
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 820,675 + -2.6 821,337 + Dsui_0810 0.32 -0.6 821,598 + Dsui_0810 0.44 -3.1 821,663 + Dsui_0810 0.47 -3.3 821,663 + Dsui_0810 0.47 -2.7 821,690 + Dsui_0810 0.48 -3.1 821,722 + Dsui_0810 0.50 -1.2 821,722 + Dsui_0810 0.50 -3.9 821,782 + Dsui_0810 0.53 -3.7 821,806 + Dsui_0810 0.54 -3.4 821,847 + Dsui_0810 0.56 -0.8 821,963 + Dsui_0810 0.61 -0.4 822,000 + Dsui_0810 0.63 -3.5 822,137 - Dsui_0810 0.69 -1.7 822,159 + Dsui_0810 0.70 -1.9 822,167 - Dsui_0810 0.71 -4.3 822,182 + Dsui_0810 0.71 -1.9 822,260 + Dsui_0810 0.75 -3.9 822,368 - Dsui_0810 0.80 -2.4 822,408 + Dsui_0810 0.82 -2.1 822,686 + -3.4 822,686 + -2.5 822,694 - +0.8 822,759 - -1.1 822,795 + -1.1 822,806 + -3.9 822,870 + Dsui_0811 0.14 -2.4 822,892 + Dsui_0811 0.18 -5.1 822,892 + Dsui_0811 0.18 -4.2 822,902 + Dsui_0811 0.20 -3.6 822,911 + Dsui_0811 0.21 -2.9 822,952 + Dsui_0811 0.28 -3.1 822,952 + Dsui_0811 0.28 -1.9 822,970 - Dsui_0811 0.31 -2.8 822,980 - Dsui_0811 0.32 -3.2 823,027 - Dsui_0811 0.40 -3.8 823,054 + Dsui_0811 0.44 -2.1 823,065 + Dsui_0811 0.46 -2.1 823,189 + Dsui_0811 0.67 -3.4 823,255 - Dsui_0811 0.78 -6.5 823,256 - Dsui_0811 0.78 -1.5 823,282 - Dsui_0811 0.82 -1.1 823,282 - Dsui_0811 0.82 -2.4 823,297 - Dsui_0811 0.84 -1.1 823,356 - -0.4 823,379 - +1.8 823,379 - -0.6 823,379 - -0.1 823,392 - -0.9 823,400 - -2.7 823,403 + -4.1 823,467 + -3.0 823,479 + -3.2 823,479 + -4.4 823,487 - Dsui_0812 0.10 -1.4 823,522 + Dsui_0812 0.13 -4.1 823,525 - Dsui_0812 0.13 -1.0 823,539 + Dsui_0812 0.14 -2.9 823,578 - Dsui_0812 0.17 -0.9 823,685 - Dsui_0812 0.25 -1.1 823,706 - Dsui_0812 0.27 -0.9 823,708 - Dsui_0812 0.27 -1.0 823,723 + Dsui_0812 0.28 -3.5 823,752 + Dsui_0812 0.30 -3.9 823,752 + Dsui_0812 0.30 -2.9
Or see this region's nucleotide sequence