Strain Fitness in Dechlorosoma suillum PS around Dsui_0785

Experiment: ALP with Fusidic 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0784 and Dsui_0785 are separated by 8 nucleotidesDsui_0785 and Dsui_0786 are separated by 117 nucleotides Dsui_0784: Dsui_0784 - hypothetical protein, at 791,338 to 792,546 _0784 Dsui_0785: Dsui_0785 - hypothetical protein, at 792,555 to 793,115 _0785 Dsui_0786: Dsui_0786 - Fe-S oxidoreductase, at 793,233 to 794,123 _0786 Position (kb) 792 793 794Strain fitness (log2 ratio) -3 -2 -1 0 1at 791.623 kb on + strand, within Dsui_0784at 791.631 kb on + strand, within Dsui_0784at 791.641 kb on - strand, within Dsui_0784at 791.757 kb on + strand, within Dsui_0784at 791.783 kb on - strand, within Dsui_0784at 791.809 kb on - strand, within Dsui_0784at 791.819 kb on - strand, within Dsui_0784at 791.853 kb on - strand, within Dsui_0784at 791.853 kb on - strand, within Dsui_0784at 791.915 kb on - strand, within Dsui_0784at 791.922 kb on - strand, within Dsui_0784at 791.977 kb on + strand, within Dsui_0784at 791.987 kb on - strand, within Dsui_0784at 791.987 kb on - strand, within Dsui_0784at 792.014 kb on + strand, within Dsui_0784at 792.081 kb on + strandat 792.110 kb on + strand, within Dsui_0784at 792.129 kb on + strand, within Dsui_0784at 792.129 kb on - strand, within Dsui_0784at 792.134 kb on - strand, within Dsui_0784at 792.172 kb on + strand, within Dsui_0784at 792.179 kb on + strand, within Dsui_0784at 792.191 kb on + strand, within Dsui_0784at 792.214 kb on - strand, within Dsui_0784at 792.218 kb on - strand, within Dsui_0784at 792.242 kb on - strand, within Dsui_0784at 792.242 kb on - strand, within Dsui_0784at 792.246 kb on + strand, within Dsui_0784at 792.254 kb on - strand, within Dsui_0784at 792.312 kb on + strand, within Dsui_0784at 792.320 kb on - strand, within Dsui_0784at 792.320 kb on - strand, within Dsui_0784at 792.346 kb on - strand, within Dsui_0784at 792.438 kb on + strandat 792.446 kb on - strandat 792.512 kb on - strandat 792.577 kb on - strandat 792.577 kb on - strandat 792.595 kb on - strandat 792.600 kb on - strandat 792.641 kb on - strand, within Dsui_0785at 792.643 kb on + strand, within Dsui_0785at 792.663 kb on + strand, within Dsui_0785at 792.714 kb on + strand, within Dsui_0785at 792.727 kb on - strand, within Dsui_0785at 792.746 kb on + strand, within Dsui_0785at 792.746 kb on + strand, within Dsui_0785at 792.754 kb on - strand, within Dsui_0785at 792.754 kb on - strand, within Dsui_0785at 792.754 kb on - strand, within Dsui_0785at 792.774 kb on + strandat 792.774 kb on + strand, within Dsui_0785at 792.856 kb on - strand, within Dsui_0785at 792.923 kb on - strand, within Dsui_0785at 792.960 kb on + strand, within Dsui_0785at 793.015 kb on + strand, within Dsui_0785at 793.124 kb on - strandat 793.154 kb on - strandat 793.169 kb on + strandat 793.287 kb on + strandat 793.326 kb on - strand, within Dsui_0786at 793.351 kb on - strand, within Dsui_0786at 793.354 kb on - strandat 793.356 kb on - strand, within Dsui_0786at 793.427 kb on - strand, within Dsui_0786at 793.462 kb on - strand, within Dsui_0786at 793.476 kb on - strand, within Dsui_0786at 793.476 kb on - strand, within Dsui_0786at 793.502 kb on + strand, within Dsui_0786at 793.502 kb on + strand, within Dsui_0786at 793.561 kb on + strand, within Dsui_0786at 793.600 kb on - strand, within Dsui_0786at 793.607 kb on - strandat 793.659 kb on + strand, within Dsui_0786at 793.662 kb on - strand, within Dsui_0786at 793.704 kb on - strand, within Dsui_0786at 793.770 kb on - strand, within Dsui_0786at 793.948 kb on + strand, within Dsui_0786at 794.034 kb on + strand, within Dsui_0786at 794.047 kb on - strandat 794.086 kb on + strandat 794.108 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml
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791,623 + Dsui_0784 0.24 +0.4
791,631 + Dsui_0784 0.24 -0.6
791,641 - Dsui_0784 0.25 -0.2
791,757 + Dsui_0784 0.35 -1.2
791,783 - Dsui_0784 0.37 +1.3
791,809 - Dsui_0784 0.39 -1.2
791,819 - Dsui_0784 0.40 -0.3
791,853 - Dsui_0784 0.43 +0.3
791,853 - Dsui_0784 0.43 -0.2
791,915 - Dsui_0784 0.48 +0.6
791,922 - Dsui_0784 0.48 +0.6
791,977 + Dsui_0784 0.53 +0.4
791,987 - Dsui_0784 0.54 +0.2
791,987 - Dsui_0784 0.54 +0.7
792,014 + Dsui_0784 0.56 -1.2
792,081 + +0.4
792,110 + Dsui_0784 0.64 -0.6
792,129 + Dsui_0784 0.65 -1.6
792,129 - Dsui_0784 0.65 +0.2
792,134 - Dsui_0784 0.66 +0.2
792,172 + Dsui_0784 0.69 +0.4
792,179 + Dsui_0784 0.70 +0.4
792,191 + Dsui_0784 0.71 -0.6
792,214 - Dsui_0784 0.72 -0.4
792,218 - Dsui_0784 0.73 +0.4
792,242 - Dsui_0784 0.75 +0.3
792,242 - Dsui_0784 0.75 -0.5
792,246 + Dsui_0784 0.75 -1.6
792,254 - Dsui_0784 0.76 +0.6
792,312 + Dsui_0784 0.81 -1.2
792,320 - Dsui_0784 0.81 -0.4
792,320 - Dsui_0784 0.81 -0.0
792,346 - Dsui_0784 0.83 +0.2
792,438 + -0.6
792,446 - +0.7
792,512 - +0.1
792,577 - -1.0
792,577 - -0.5
792,595 - -2.6
792,600 - +0.3
792,641 - Dsui_0785 0.15 -0.1
792,643 + Dsui_0785 0.16 -3.4
792,663 + Dsui_0785 0.19 -2.6
792,714 + Dsui_0785 0.28 -1.9
792,727 - Dsui_0785 0.31 -0.2
792,746 + Dsui_0785 0.34 -0.6
792,746 + Dsui_0785 0.34 -2.6
792,754 - Dsui_0785 0.35 +0.3
792,754 - Dsui_0785 0.35 -0.2
792,754 - Dsui_0785 0.35 -0.1
792,774 + +0.4
792,774 + Dsui_0785 0.39 +0.4
792,856 - Dsui_0785 0.54 -0.7
792,923 - Dsui_0785 0.66 -0.1
792,960 + Dsui_0785 0.72 +1.4
793,015 + Dsui_0785 0.82 +0.4
793,124 - -0.1
793,154 - -0.2
793,169 + -0.6
793,287 + -0.6
793,326 - Dsui_0786 0.10 -1.9
793,351 - Dsui_0786 0.13 +0.4
793,354 - +0.4
793,356 - Dsui_0786 0.14 -0.6
793,427 - Dsui_0786 0.22 -0.8
793,462 - Dsui_0786 0.26 -1.9
793,476 - Dsui_0786 0.27 -2.4
793,476 - Dsui_0786 0.27 +0.4
793,502 + Dsui_0786 0.30 -0.6
793,502 + Dsui_0786 0.30 +0.8
793,561 + Dsui_0786 0.37 +1.0
793,600 - Dsui_0786 0.41 -1.9
793,607 - +0.4
793,659 + Dsui_0786 0.48 -0.3
793,662 - Dsui_0786 0.48 -1.8
793,704 - Dsui_0786 0.53 +1.0
793,770 - Dsui_0786 0.60 -1.3
793,948 + Dsui_0786 0.80 -0.5
794,034 + Dsui_0786 0.90 +0.8
794,047 - -0.3
794,086 + +0.4
794,108 + +0.7

Or see this region's nucleotide sequence