Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0727 and Dsui_0728 are separated by 101 nucleotides Dsui_0728 and Dsui_0729 are separated by 142 nucleotides
Dsui_0727: Dsui_0727 - putative integral membrane protein, at 721,086 to 722,141
_0727
Dsui_0728: Dsui_0728 - threonine ammonia-lyase, biosynthetic, long form, at 722,243 to 723,754
_0728
Dsui_0729: Dsui_0729 - putative autotransporter protein,putative Ig domain-containing protein, at 723,897 to 728,669
_0729
Position (kb)
722
723
724 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 721.244 kb on + strand, within Dsui_0727 at 721.330 kb on + strand, within Dsui_0727 at 721.358 kb on + strand at 721.397 kb on - strand, within Dsui_0727 at 721.541 kb on + strand, within Dsui_0727 at 721.807 kb on + strand, within Dsui_0727 at 721.917 kb on + strand, within Dsui_0727 at 721.926 kb on - strand, within Dsui_0727 at 721.966 kb on - strand, within Dsui_0727 at 721.977 kb on + strand, within Dsui_0727 at 722.016 kb on - strand at 722.016 kb on - strand, within Dsui_0727 at 722.061 kb on + strand at 722.074 kb on - strand at 722.208 kb on - strand at 722.208 kb on - strand at 722.208 kb on - strand at 722.563 kb on + strand at 723.804 kb on - strand at 723.883 kb on - strand at 723.920 kb on + strand at 723.920 kb on + strand at 723.926 kb on + strand at 723.926 kb on + strand at 723.926 kb on + strand at 723.926 kb on + strand at 723.964 kb on + strand at 723.974 kb on + strand at 723.990 kb on - strand at 724.045 kb on - strand at 724.092 kb on + strand at 724.164 kb on + strand at 724.242 kb on - strand at 724.497 kb on - strand, within Dsui_0729 at 724.580 kb on - strand, within Dsui_0729 at 724.632 kb on - strand, within Dsui_0729 at 724.661 kb on - strand, within Dsui_0729 at 724.709 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 721,244 + Dsui_0727 0.15 -1.2 721,330 + Dsui_0727 0.23 -2.8 721,358 + +0.4 721,397 - Dsui_0727 0.29 -0.7 721,541 + Dsui_0727 0.43 -1.2 721,807 + Dsui_0727 0.68 -1.2 721,917 + Dsui_0727 0.79 -1.6 721,926 - Dsui_0727 0.80 -0.0 721,966 - Dsui_0727 0.83 -0.3 721,977 + Dsui_0727 0.84 -0.6 722,016 - +0.4 722,016 - Dsui_0727 0.88 -0.0 722,061 + +0.4 722,074 - -0.1 722,208 - -0.4 722,208 - -0.2 722,208 - +0.4 722,563 + -0.6 723,804 - +0.4 723,883 - +0.4 723,920 + -1.2 723,920 + -2.4 723,926 + -0.6 723,926 + +0.4 723,926 + -1.2 723,926 + +0.4 723,964 + +0.4 723,974 + -1.2 723,990 - -1.6 724,045 - +0.4 724,092 + -1.6 724,164 + -0.6 724,242 - -0.6 724,497 - Dsui_0729 0.13 -0.6 724,580 - Dsui_0729 0.14 -1.2 724,632 - Dsui_0729 0.15 -1.2 724,661 - Dsui_0729 0.16 -0.6 724,709 - +0.4
Or see this region's nucleotide sequence