Strain Fitness in Dechlorosoma suillum PS around Dsui_0692

Experiment: ALP with Fusidic 0.01 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0689 and Dsui_0690 are separated by 72 nucleotidesDsui_0690 and Dsui_0691 are separated by 160 nucleotidesDsui_0691 and Dsui_0692 are separated by 17 nucleotidesDsui_0692 and Dsui_0693 are separated by 82 nucleotides Dsui_0689: Dsui_0689 - lysophospholipase, at 686,125 to 686,937 _0689 Dsui_0690: Dsui_0690 - hypothetical protein, at 687,010 to 687,204 _0690 Dsui_0691: Dsui_0691 - hypothetical protein, at 687,365 to 687,562 _0691 Dsui_0692: Dsui_0692 - hypothetical protein, at 687,580 to 688,434 _0692 Dsui_0693: Dsui_0693 - hypothetical protein, at 688,517 to 689,674 _0693 Position (kb) 687 688 689Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 686.588 kb on - strand, within Dsui_0689at 686.797 kb on + strand, within Dsui_0689at 686.905 kb on + strandat 686.925 kb on - strandat 686.998 kb on + strandat 687.016 kb on - strandat 687.028 kb on - strandat 687.051 kb on + strand, within Dsui_0690at 687.059 kb on - strand, within Dsui_0690at 687.069 kb on - strand, within Dsui_0690at 687.095 kb on + strand, within Dsui_0690at 687.110 kb on + strand, within Dsui_0690at 687.129 kb on - strand, within Dsui_0690at 687.144 kb on + strandat 687.159 kb on - strand, within Dsui_0690at 687.214 kb on - strandat 687.288 kb on + strandat 687.294 kb on + strandat 687.311 kb on + strandat 687.311 kb on + strandat 687.311 kb on + strandat 687.311 kb on + strandat 687.311 kb on + strandat 687.319 kb on - strandat 687.319 kb on - strandat 687.342 kb on + strandat 687.348 kb on - strandat 687.386 kb on + strand, within Dsui_0691at 687.466 kb on + strand, within Dsui_0691at 687.539 kb on - strand, within Dsui_0691at 687.556 kb on + strandat 687.581 kb on - strandat 687.647 kb on + strandat 687.655 kb on - strandat 687.716 kb on - strand, within Dsui_0692at 687.748 kb on - strandat 687.756 kb on + strand, within Dsui_0692at 687.786 kb on + strand, within Dsui_0692at 687.856 kb on - strand, within Dsui_0692at 687.873 kb on - strand, within Dsui_0692at 687.965 kb on + strand, within Dsui_0692at 688.002 kb on + strandat 688.084 kb on + strand, within Dsui_0692at 688.093 kb on - strand, within Dsui_0692at 688.144 kb on + strand, within Dsui_0692at 688.171 kb on + strandat 688.194 kb on - strand, within Dsui_0692at 688.286 kb on + strand, within Dsui_0692at 688.294 kb on - strand, within Dsui_0692at 688.316 kb on + strand, within Dsui_0692at 688.348 kb on - strand, within Dsui_0692at 688.397 kb on - strandat 688.425 kb on - strandat 688.467 kb on + strandat 688.522 kb on + strandat 688.524 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml
remove
686,588 - Dsui_0689 0.57 +0.4
686,797 + Dsui_0689 0.83 -1.2
686,905 + -0.9
686,925 - -0.7
686,998 + -0.4
687,016 - +0.3
687,028 - -0.6
687,051 + Dsui_0690 0.21 -0.5
687,059 - Dsui_0690 0.25 -0.3
687,069 - Dsui_0690 0.30 -0.1
687,095 + Dsui_0690 0.44 -1.1
687,110 + Dsui_0690 0.51 +0.3
687,129 - Dsui_0690 0.61 -0.2
687,144 + -0.7
687,159 - Dsui_0690 0.76 -0.6
687,214 - -0.3
687,288 + -1.2
687,294 + +1.7
687,311 + -1.7
687,311 + -0.2
687,311 + -0.7
687,311 + -0.7
687,311 + -1.2
687,319 - -2.0
687,319 - -2.2
687,342 + +0.3
687,348 - +0.3
687,386 + Dsui_0691 0.11 -1.2
687,466 + Dsui_0691 0.51 +0.3
687,539 - Dsui_0691 0.88 -2.7
687,556 + +0.3
687,581 - -2.5
687,647 + +0.3
687,655 - -1.2
687,716 - Dsui_0692 0.16 +1.3
687,748 - +0.3
687,756 + Dsui_0692 0.21 -2.2
687,786 + Dsui_0692 0.24 -1.2
687,856 - Dsui_0692 0.32 -0.7
687,873 - Dsui_0692 0.34 +1.2
687,965 + Dsui_0692 0.45 -2.7
688,002 + -1.2
688,084 + Dsui_0692 0.59 +0.3
688,093 - Dsui_0692 0.60 -1.5
688,144 + Dsui_0692 0.66 -2.0
688,171 + -0.7
688,194 - Dsui_0692 0.72 +0.3
688,286 + Dsui_0692 0.83 -2.8
688,294 - Dsui_0692 0.84 -2.1
688,316 + Dsui_0692 0.86 -2.7
688,348 - Dsui_0692 0.90 -1.7
688,397 - -0.9
688,425 - -0.2
688,467 + -1.7
688,522 + +2.4
688,524 - +0.2

Or see this region's nucleotide sequence