Strain Fitness in Dechlorosoma suillum PS around Dsui_0666

Experiment: ALP with Fusidic 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0665 and Dsui_0666 are separated by 145 nucleotidesDsui_0666 and Dsui_0667 are separated by 305 nucleotidesDsui_0667 and Dsui_0668 are separated by 186 nucleotides Dsui_0665: Dsui_0665 - polyphosphate kinase 2, PA0141 family, at 662,089 to 663,288 _0665 Dsui_0666: Dsui_0666 - Na+/proline symporter, at 663,434 to 664,936 _0666 Dsui_0667: Dsui_0667 - hypothetical protein, at 665,242 to 665,448 _0667 Dsui_0668: Dsui_0668 - putative membrane protein, at 665,635 to 668,355 _0668 Position (kb) 663 664 665Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 662.454 kb on + strand, within Dsui_0665at 662.454 kb on + strand, within Dsui_0665at 662.454 kb on + strand, within Dsui_0665at 662.568 kb on + strand, within Dsui_0665at 662.668 kb on - strand, within Dsui_0665at 662.708 kb on + strand, within Dsui_0665at 662.716 kb on - strand, within Dsui_0665at 662.751 kb on - strand, within Dsui_0665at 662.792 kb on - strand, within Dsui_0665at 663.037 kb on - strand, within Dsui_0665at 663.048 kb on + strand, within Dsui_0665at 663.048 kb on + strand, within Dsui_0665at 663.056 kb on - strand, within Dsui_0665at 663.081 kb on + strand, within Dsui_0665at 663.135 kb on + strand, within Dsui_0665at 663.161 kb on - strand, within Dsui_0665at 663.197 kb on + strandat 663.620 kb on + strandat 663.686 kb on - strand, within Dsui_0666at 663.941 kb on + strand, within Dsui_0666at 663.959 kb on - strand, within Dsui_0666at 664.037 kb on - strand, within Dsui_0666at 664.109 kb on + strand, within Dsui_0666at 664.217 kb on - strand, within Dsui_0666at 664.219 kb on + strand, within Dsui_0666at 664.400 kb on + strand, within Dsui_0666at 664.408 kb on - strand, within Dsui_0666at 664.527 kb on + strand, within Dsui_0666at 664.527 kb on + strandat 664.535 kb on - strand, within Dsui_0666at 664.535 kb on - strand, within Dsui_0666at 664.612 kb on + strand, within Dsui_0666at 664.724 kb on + strand, within Dsui_0666at 664.732 kb on - strand, within Dsui_0666at 664.919 kb on + strandat 664.919 kb on + strandat 664.937 kb on + strandat 664.984 kb on + strandat 664.984 kb on + strandat 664.989 kb on + strandat 664.989 kb on + strandat 664.992 kb on - strandat 665.027 kb on - strandat 665.086 kb on + strandat 665.086 kb on + strandat 665.086 kb on + strandat 665.087 kb on + strandat 665.087 kb on + strandat 665.092 kb on + strandat 665.094 kb on - strandat 665.094 kb on - strandat 665.094 kb on - strandat 665.095 kb on - strandat 665.095 kb on - strandat 665.097 kb on + strandat 665.097 kb on + strandat 665.097 kb on + strandat 665.100 kb on - strandat 665.105 kb on - strandat 665.105 kb on - strandat 665.105 kb on - strandat 665.110 kb on + strandat 665.118 kb on - strandat 665.134 kb on + strandat 665.134 kb on + strandat 665.142 kb on - strandat 665.148 kb on - strandat 665.266 kb on + strand, within Dsui_0667at 665.266 kb on + strandat 665.266 kb on + strand, within Dsui_0667at 665.266 kb on + strand, within Dsui_0667at 665.313 kb on + strandat 665.313 kb on + strand, within Dsui_0667at 665.313 kb on + strand, within Dsui_0667at 665.330 kb on + strand, within Dsui_0667at 665.333 kb on - strand, within Dsui_0667at 665.371 kb on - strand, within Dsui_0667at 665.446 kb on + strandat 665.504 kb on - strandat 665.530 kb on - strandat 665.536 kb on - strandat 665.685 kb on - strandat 665.685 kb on - strandat 665.703 kb on - strandat 665.822 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml
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662,454 + Dsui_0665 0.30 -1.2
662,454 + Dsui_0665 0.30 -0.2
662,454 + Dsui_0665 0.30 +0.4
662,568 + Dsui_0665 0.40 -1.6
662,668 - Dsui_0665 0.48 +0.3
662,708 + Dsui_0665 0.52 +0.4
662,716 - Dsui_0665 0.52 -0.1
662,751 - Dsui_0665 0.55 -0.1
662,792 - Dsui_0665 0.59 -0.7
663,037 - Dsui_0665 0.79 -0.6
663,048 + Dsui_0665 0.80 -0.6
663,048 + Dsui_0665 0.80 -0.6
663,056 - Dsui_0665 0.81 +0.6
663,081 + Dsui_0665 0.83 -0.6
663,135 + Dsui_0665 0.87 -0.6
663,161 - Dsui_0665 0.89 +1.4
663,197 + +0.4
663,620 + +0.4
663,686 - Dsui_0666 0.17 +1.2
663,941 + Dsui_0666 0.34 -0.6
663,959 - Dsui_0666 0.35 +0.7
664,037 - Dsui_0666 0.40 +0.9
664,109 + Dsui_0666 0.45 -1.2
664,217 - Dsui_0666 0.52 +0.4
664,219 + Dsui_0666 0.52 +0.4
664,400 + Dsui_0666 0.64 -1.6
664,408 - Dsui_0666 0.65 +1.5
664,527 + Dsui_0666 0.73 +0.4
664,527 + +0.4
664,535 - Dsui_0666 0.73 +1.8
664,535 - Dsui_0666 0.73 +1.1
664,612 + Dsui_0666 0.78 -1.2
664,724 + Dsui_0666 0.86 -1.2
664,732 - Dsui_0666 0.86 +0.7
664,919 + +0.4
664,919 + +0.4
664,937 + -0.6
664,984 + -1.2
664,984 + -1.2
664,989 + +0.4
664,989 + -1.2
664,992 - -0.3
665,027 - -0.6
665,086 + +0.4
665,086 + -0.6
665,086 + -0.6
665,087 + +0.4
665,087 + +0.4
665,092 + -0.6
665,094 - -1.6
665,094 - -1.2
665,094 - -1.6
665,095 - -1.2
665,095 - -0.6
665,097 + -3.1
665,097 + -1.2
665,097 + +0.4
665,100 - -1.2
665,105 - -0.6
665,105 - -2.0
665,105 - -0.6
665,110 + +0.4
665,118 - -1.2
665,134 + +0.4
665,134 + -1.6
665,142 - -1.6
665,148 - -0.6
665,266 + Dsui_0667 0.12 -2.0
665,266 + -0.6
665,266 + Dsui_0667 0.12 -0.6
665,266 + Dsui_0667 0.12 +0.4
665,313 + +0.4
665,313 + Dsui_0667 0.34 -0.6
665,313 + Dsui_0667 0.34 -1.2
665,330 + Dsui_0667 0.43 -1.6
665,333 - Dsui_0667 0.44 +0.4
665,371 - Dsui_0667 0.62 -0.6
665,446 + +0.4
665,504 - -0.6
665,530 - +0.4
665,536 - -2.0
665,685 - +0.4
665,685 - +0.4
665,703 - +0.4
665,822 - +0.4

Or see this region's nucleotide sequence