Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0662 and Dsui_0663 overlap by 8 nucleotides Dsui_0663 and Dsui_0664 overlap by 14 nucleotides Dsui_0664 and Dsui_0665 are separated by 78 nucleotides
Dsui_0662: Dsui_0662 - phosphomethylpyrimidine kinase, at 659,258 to 660,100
_0662
Dsui_0663: Dsui_0663 - thiamine-phosphate pyrophosphorylase, at 660,093 to 660,740
_0663
Dsui_0664: Dsui_0664 - glutamate-1-semialdehyde-2,1-aminomutase, at 660,727 to 662,010
_0664
Dsui_0665: Dsui_0665 - polyphosphate kinase 2, PA0141 family, at 662,089 to 663,288
_0665
Position (kb) 660
661
662
663 Strain fitness (log2 ratio) -1
0
1 at 660.104 kb on + strand at 660.723 kb on + strand at 662.104 kb on + strand at 662.225 kb on + strand, within Dsui_0665 at 662.225 kb on + strand at 662.226 kb on - strand, within Dsui_0665 at 662.233 kb on - strand, within Dsui_0665 at 662.233 kb on - strand, within Dsui_0665 at 662.329 kb on - strand, within Dsui_0665 at 662.366 kb on + strand, within Dsui_0665 at 662.454 kb on + strand, within Dsui_0665 at 662.454 kb on + strand, within Dsui_0665 at 662.454 kb on + strand, within Dsui_0665 at 662.568 kb on + strand, within Dsui_0665 at 662.668 kb on - strand, within Dsui_0665 at 662.708 kb on + strand, within Dsui_0665 at 662.716 kb on - strand, within Dsui_0665 at 662.751 kb on - strand, within Dsui_0665 at 662.792 kb on - strand, within Dsui_0665
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 660,104 + -0.9 660,723 + +1.6 662,104 + -0.6 662,225 + Dsui_0665 0.11 -0.6 662,225 + +0.4 662,226 - Dsui_0665 0.11 +0.0 662,233 - Dsui_0665 0.12 -0.1 662,233 - Dsui_0665 0.12 +0.2 662,329 - Dsui_0665 0.20 -0.2 662,366 + Dsui_0665 0.23 -0.6 662,454 + Dsui_0665 0.30 -1.2 662,454 + Dsui_0665 0.30 -0.2 662,454 + Dsui_0665 0.30 +0.4 662,568 + Dsui_0665 0.40 -1.6 662,668 - Dsui_0665 0.48 +0.3 662,708 + Dsui_0665 0.52 +0.4 662,716 - Dsui_0665 0.52 -0.1 662,751 - Dsui_0665 0.55 -0.1 662,792 - Dsui_0665 0.59 -0.7
Or see this region's nucleotide sequence