Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0628 and Dsui_0629 overlap by 4 nucleotides Dsui_0629 and Dsui_0630 are separated by 72 nucleotides Dsui_0630 and Dsui_0631 are separated by 189 nucleotides Dsui_0631 and Dsui_0632 are separated by 50 nucleotides
Dsui_0628: Dsui_0628 - ABC-type branched-chain amino acid transport system, permease component, at 621,439 to 622,515
_0628
Dsui_0629: Dsui_0629 - branched-chain amino acid ABC-type transport system, permease component, at 622,512 to 623,435
_0629
Dsui_0630: Dsui_0630 - ABC-type branched-chain amino acid transport system, periplasmic component, at 623,508 to 624,812
_0630
Dsui_0631: Dsui_0631 - cytochrome c551/c552, at 625,002 to 625,310
_0631
Dsui_0632: Dsui_0632 - thioredoxin domain-containing protein, at 625,361 to 627,409
_0632
Position (kb) 623
624
625 Strain fitness (log2 ratio) -2
-1
0
1 at 622.510 kb on + strand at 622.510 kb on + strand at 622.511 kb on - strand at 622.595 kb on + strand at 622.676 kb on - strand, within Dsui_0629 at 622.857 kb on + strand, within Dsui_0629 at 622.880 kb on - strand, within Dsui_0629 at 622.920 kb on + strand, within Dsui_0629 at 622.928 kb on - strand, within Dsui_0629 at 623.013 kb on + strand, within Dsui_0629 at 623.057 kb on + strand, within Dsui_0629 at 623.132 kb on - strand at 623.280 kb on + strand, within Dsui_0629 at 623.285 kb on + strand, within Dsui_0629 at 623.344 kb on - strand at 623.372 kb on - strand at 623.396 kb on + strand at 623.396 kb on + strand at 623.644 kb on + strand, within Dsui_0630 at 623.659 kb on + strand, within Dsui_0630 at 623.785 kb on + strand, within Dsui_0630 at 623.785 kb on + strand, within Dsui_0630 at 623.948 kb on - strand, within Dsui_0630 at 623.948 kb on - strand, within Dsui_0630 at 624.004 kb on + strand, within Dsui_0630 at 624.124 kb on + strand at 624.124 kb on + strand, within Dsui_0630 at 624.170 kb on + strand, within Dsui_0630 at 624.178 kb on - strand, within Dsui_0630 at 624.223 kb on - strand, within Dsui_0630 at 624.290 kb on - strand, within Dsui_0630 at 624.295 kb on + strand, within Dsui_0630 at 624.355 kb on + strand at 624.447 kb on - strand, within Dsui_0630 at 624.460 kb on + strand, within Dsui_0630 at 624.468 kb on - strand, within Dsui_0630 at 624.491 kb on - strand, within Dsui_0630 at 624.496 kb on + strand, within Dsui_0630 at 624.504 kb on - strand, within Dsui_0630 at 624.506 kb on + strand, within Dsui_0630 at 624.547 kb on - strand, within Dsui_0630 at 624.559 kb on - strand, within Dsui_0630 at 624.654 kb on + strand, within Dsui_0630 at 624.777 kb on + strand at 624.780 kb on - strand at 624.790 kb on - strand at 624.793 kb on + strand at 625.011 kb on + strand at 625.019 kb on - strand at 625.021 kb on + strand at 625.127 kb on - strand, within Dsui_0631 at 625.230 kb on + strand, within Dsui_0631 at 625.250 kb on + strand, within Dsui_0631 at 625.401 kb on + strand at 625.603 kb on + strand, within Dsui_0632 at 625.685 kb on - strand, within Dsui_0632 at 625.741 kb on - strand, within Dsui_0632 at 625.748 kb on + strand, within Dsui_0632 at 625.793 kb on + strand, within Dsui_0632
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 622,510 + +0.4 622,510 + -0.6 622,511 - -0.3 622,595 + +0.4 622,676 - Dsui_0629 0.18 +0.1 622,857 + Dsui_0629 0.37 +0.0 622,880 - Dsui_0629 0.40 +0.7 622,920 + Dsui_0629 0.44 -0.6 622,928 - Dsui_0629 0.45 +0.3 623,013 + Dsui_0629 0.54 -0.6 623,057 + Dsui_0629 0.59 -0.6 623,132 - -1.6 623,280 + Dsui_0629 0.83 -1.1 623,285 + Dsui_0629 0.84 +0.4 623,344 - -0.5 623,372 - +0.7 623,396 + -1.6 623,396 + -0.4 623,644 + Dsui_0630 0.10 +0.4 623,659 + Dsui_0630 0.12 -0.2 623,785 + Dsui_0630 0.21 -2.4 623,785 + Dsui_0630 0.21 -1.6 623,948 - Dsui_0630 0.34 -0.5 623,948 - Dsui_0630 0.34 +0.6 624,004 + Dsui_0630 0.38 -0.2 624,124 + +0.4 624,124 + Dsui_0630 0.47 -0.6 624,170 + Dsui_0630 0.51 +0.4 624,178 - Dsui_0630 0.51 +0.0 624,223 - Dsui_0630 0.55 -0.1 624,290 - Dsui_0630 0.60 +0.4 624,295 + Dsui_0630 0.60 -1.8 624,355 + +0.4 624,447 - Dsui_0630 0.72 -0.4 624,460 + Dsui_0630 0.73 -2.6 624,468 - Dsui_0630 0.74 -0.2 624,491 - Dsui_0630 0.75 -0.4 624,496 + Dsui_0630 0.76 -2.2 624,504 - Dsui_0630 0.76 +0.3 624,506 + Dsui_0630 0.76 +0.4 624,547 - Dsui_0630 0.80 -0.2 624,559 - Dsui_0630 0.81 -0.5 624,654 + Dsui_0630 0.88 -2.2 624,777 + +0.4 624,780 - -0.4 624,790 - +0.2 624,793 + +0.4 625,011 + +0.8 625,019 - -0.2 625,021 + -2.2 625,127 - Dsui_0631 0.40 +0.6 625,230 + Dsui_0631 0.74 +0.8 625,250 + Dsui_0631 0.80 -2.6 625,401 + -0.6 625,603 + Dsui_0632 0.12 -1.6 625,685 - Dsui_0632 0.16 +0.1 625,741 - Dsui_0632 0.19 -0.4 625,748 + Dsui_0632 0.19 -0.6 625,793 + Dsui_0632 0.21 -1.2
Or see this region's nucleotide sequence