Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0628 and Dsui_0629 overlap by 4 nucleotides Dsui_0629 and Dsui_0630 are separated by 72 nucleotides
Dsui_0628: Dsui_0628 - ABC-type branched-chain amino acid transport system, permease component, at 621,439 to 622,515
_0628
Dsui_0629: Dsui_0629 - branched-chain amino acid ABC-type transport system, permease component, at 622,512 to 623,435
_0629
Dsui_0630: Dsui_0630 - ABC-type branched-chain amino acid transport system, periplasmic component, at 623,508 to 624,812
_0630
Position (kb)
622
623
624 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 621.617 kb on + strand, within Dsui_0628 at 621.617 kb on + strand, within Dsui_0628 at 621.639 kb on - strand, within Dsui_0628 at 621.689 kb on + strand, within Dsui_0628 at 621.828 kb on + strand, within Dsui_0628 at 621.858 kb on + strand, within Dsui_0628 at 622.029 kb on + strand, within Dsui_0628 at 622.166 kb on + strand, within Dsui_0628 at 622.261 kb on + strand at 622.278 kb on + strand, within Dsui_0628 at 622.301 kb on - strand, within Dsui_0628 at 622.413 kb on + strand at 622.501 kb on - strand at 622.510 kb on + strand at 622.510 kb on + strand at 622.511 kb on - strand at 622.595 kb on + strand at 622.676 kb on - strand, within Dsui_0629 at 622.857 kb on + strand, within Dsui_0629 at 622.880 kb on - strand, within Dsui_0629 at 622.920 kb on + strand, within Dsui_0629 at 622.928 kb on - strand, within Dsui_0629 at 623.013 kb on + strand, within Dsui_0629 at 623.057 kb on + strand, within Dsui_0629 at 623.132 kb on - strand at 623.280 kb on + strand, within Dsui_0629 at 623.285 kb on + strand, within Dsui_0629 at 623.344 kb on - strand at 623.372 kb on - strand at 623.396 kb on + strand at 623.396 kb on + strand at 623.644 kb on + strand, within Dsui_0630 at 623.659 kb on + strand, within Dsui_0630 at 623.785 kb on + strand, within Dsui_0630 at 623.785 kb on + strand, within Dsui_0630 at 623.948 kb on - strand, within Dsui_0630 at 623.948 kb on - strand, within Dsui_0630 at 624.004 kb on + strand, within Dsui_0630 at 624.124 kb on + strand at 624.124 kb on + strand, within Dsui_0630 at 624.170 kb on + strand, within Dsui_0630 at 624.178 kb on - strand, within Dsui_0630 at 624.223 kb on - strand, within Dsui_0630 at 624.290 kb on - strand, within Dsui_0630 at 624.295 kb on + strand, within Dsui_0630 at 624.355 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 621,617 + Dsui_0628 0.17 +0.4 621,617 + Dsui_0628 0.17 +0.4 621,639 - Dsui_0628 0.19 -0.1 621,689 + Dsui_0628 0.23 -4.1 621,828 + Dsui_0628 0.36 +0.4 621,858 + Dsui_0628 0.39 -0.6 622,029 + Dsui_0628 0.55 -0.6 622,166 + Dsui_0628 0.68 -1.6 622,261 + +0.4 622,278 + Dsui_0628 0.78 -1.2 622,301 - Dsui_0628 0.80 +0.4 622,413 + -0.6 622,501 - +0.8 622,510 + +0.4 622,510 + -0.6 622,511 - -0.3 622,595 + +0.4 622,676 - Dsui_0629 0.18 +0.1 622,857 + Dsui_0629 0.37 +0.0 622,880 - Dsui_0629 0.40 +0.7 622,920 + Dsui_0629 0.44 -0.6 622,928 - Dsui_0629 0.45 +0.3 623,013 + Dsui_0629 0.54 -0.6 623,057 + Dsui_0629 0.59 -0.6 623,132 - -1.6 623,280 + Dsui_0629 0.83 -1.1 623,285 + Dsui_0629 0.84 +0.4 623,344 - -0.5 623,372 - +0.7 623,396 + -1.6 623,396 + -0.4 623,644 + Dsui_0630 0.10 +0.4 623,659 + Dsui_0630 0.12 -0.2 623,785 + Dsui_0630 0.21 -2.4 623,785 + Dsui_0630 0.21 -1.6 623,948 - Dsui_0630 0.34 -0.5 623,948 - Dsui_0630 0.34 +0.6 624,004 + Dsui_0630 0.38 -0.2 624,124 + +0.4 624,124 + Dsui_0630 0.47 -0.6 624,170 + Dsui_0630 0.51 +0.4 624,178 - Dsui_0630 0.51 +0.0 624,223 - Dsui_0630 0.55 -0.1 624,290 - Dsui_0630 0.60 +0.4 624,295 + Dsui_0630 0.60 -1.8 624,355 + +0.4
Or see this region's nucleotide sequence