Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0572 and Dsui_0573 are separated by 241 nucleotides Dsui_0573 and Dsui_0574 are separated by 16 nucleotides Dsui_0574 and Dsui_0575 are separated by 12 nucleotides
Dsui_0572: Dsui_0572 - hypothetical protein, at 570,879 to 571,334
_0572
Dsui_0573: Dsui_0573 - ferredoxin-like protein, at 571,576 to 571,863
_0573
Dsui_0574: Dsui_0574 - flavin-dependent dehydrogenase, at 571,880 to 573,178
_0574
Dsui_0575: Dsui_0575 - electron transfer flavoprotein, alpha subunit, at 573,191 to 574,273
_0575
Position (kb) 571
572
573
574 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 571.022 kb on - strand, within Dsui_0572 at 571.041 kb on - strand, within Dsui_0572 at 571.138 kb on - strand, within Dsui_0572 at 571.171 kb on + strand, within Dsui_0572 at 571.194 kb on + strand, within Dsui_0572 at 571.251 kb on - strand, within Dsui_0572 at 571.297 kb on - strand at 571.317 kb on - strand at 571.406 kb on + strand at 571.416 kb on - strand at 571.458 kb on + strand at 571.534 kb on + strand at 571.534 kb on - strand at 571.535 kb on + strand at 571.535 kb on + strand at 571.535 kb on + strand at 571.535 kb on + strand at 571.543 kb on - strand at 571.543 kb on - strand at 571.562 kb on + strand at 571.701 kb on + strand, within Dsui_0573 at 571.721 kb on - strand, within Dsui_0573 at 571.758 kb on - strand at 571.873 kb on - strand at 571.978 kb on + strand at 572.014 kb on - strand, within Dsui_0574 at 572.014 kb on - strand, within Dsui_0574 at 572.146 kb on + strand at 572.192 kb on + strand, within Dsui_0574 at 572.303 kb on - strand, within Dsui_0574 at 572.303 kb on - strand at 572.321 kb on - strand, within Dsui_0574 at 572.339 kb on - strand, within Dsui_0574 at 572.430 kb on + strand at 572.505 kb on + strand, within Dsui_0574 at 572.638 kb on - strand, within Dsui_0574 at 572.645 kb on - strand at 572.793 kb on - strand, within Dsui_0574 at 572.821 kb on - strand at 572.838 kb on - strand, within Dsui_0574 at 572.887 kb on - strand, within Dsui_0574 at 572.977 kb on + strand, within Dsui_0574 at 573.091 kb on + strand at 573.099 kb on - strand at 573.121 kb on - strand at 573.231 kb on - strand at 573.255 kb on + strand at 573.332 kb on - strand, within Dsui_0575 at 573.334 kb on + strand, within Dsui_0575 at 573.484 kb on + strand, within Dsui_0575 at 573.716 kb on - strand, within Dsui_0575 at 573.737 kb on - strand, within Dsui_0575 at 573.864 kb on - strand, within Dsui_0575 at 573.904 kb on + strand at 573.964 kb on + strand, within Dsui_0575 at 574.022 kb on - strand, within Dsui_0575 at 574.065 kb on - strand, within Dsui_0575 at 574.077 kb on + strand, within Dsui_0575 at 574.095 kb on + strand, within Dsui_0575 at 574.155 kb on - strand, within Dsui_0575
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 571,022 - Dsui_0572 0.31 +0.9 571,041 - Dsui_0572 0.36 -0.6 571,138 - Dsui_0572 0.57 +0.1 571,171 + Dsui_0572 0.64 +0.4 571,194 + Dsui_0572 0.69 +0.4 571,251 - Dsui_0572 0.82 -0.5 571,297 - -1.9 571,317 - +1.7 571,406 + +0.4 571,416 - +2.2 571,458 + +0.4 571,534 + -1.2 571,534 - -0.9 571,535 + -1.9 571,535 + -0.6 571,535 + -0.6 571,535 + -2.2 571,543 - +1.4 571,543 - +0.2 571,562 + +0.4 571,701 + Dsui_0573 0.43 -1.6 571,721 - Dsui_0573 0.50 +0.4 571,758 - -0.6 571,873 - -1.2 571,978 + -0.6 572,014 - Dsui_0574 0.10 +0.4 572,014 - Dsui_0574 0.10 +0.4 572,146 + +0.4 572,192 + Dsui_0574 0.24 -2.6 572,303 - Dsui_0574 0.33 -1.6 572,303 - +0.4 572,321 - Dsui_0574 0.34 +0.4 572,339 - Dsui_0574 0.35 -0.6 572,430 + +0.4 572,505 + Dsui_0574 0.48 -1.2 572,638 - Dsui_0574 0.58 -1.9 572,645 - +0.4 572,793 - Dsui_0574 0.70 -1.9 572,821 - +0.4 572,838 - Dsui_0574 0.74 -2.2 572,887 - Dsui_0574 0.78 -0.6 572,977 + Dsui_0574 0.84 -0.6 573,091 + +0.4 573,099 - -1.6 573,121 - -1.2 573,231 - +0.4 573,255 + +0.4 573,332 - Dsui_0575 0.13 -2.2 573,334 + Dsui_0575 0.13 +0.4 573,484 + Dsui_0575 0.27 +0.4 573,716 - Dsui_0575 0.48 -3.2 573,737 - Dsui_0575 0.50 +0.4 573,864 - Dsui_0575 0.62 -1.9 573,904 + +0.4 573,964 + Dsui_0575 0.71 +0.4 574,022 - Dsui_0575 0.77 -0.2 574,065 - Dsui_0575 0.81 -0.6 574,077 + Dsui_0575 0.82 -1.2 574,095 + Dsui_0575 0.83 +0.4 574,155 - Dsui_0575 0.89 +0.4
Or see this region's nucleotide sequence