Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0568 and Dsui_0569 are separated by 81 nucleotides Dsui_0569 and Dsui_0570 are separated by 19 nucleotides Dsui_0570 and Dsui_0571 overlap by 10 nucleotides Dsui_0571 and Dsui_0572 are separated by 9 nucleotides
Dsui_0568: Dsui_0568 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 567,564 to 569,480
_0568
Dsui_0569: Dsui_0569 - hypothetical protein, at 569,562 to 570,041
_0569
Dsui_0570: Dsui_0570 - hypothetical protein, at 570,061 to 570,555
_0570
Dsui_0571: Dsui_0571 - ferredoxin, at 570,546 to 570,869
_0571
Dsui_0572: Dsui_0572 - hypothetical protein, at 570,879 to 571,334
_0572
Position (kb) 570
571 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 569.110 kb on - strand, within Dsui_0568 at 569.138 kb on - strand, within Dsui_0568 at 569.183 kb on + strand, within Dsui_0568 at 569.191 kb on - strand, within Dsui_0568 at 569.271 kb on - strand at 569.366 kb on - strand at 569.449 kb on - strand at 569.449 kb on - strand at 569.514 kb on + strand at 569.514 kb on + strand at 569.517 kb on - strand at 569.734 kb on - strand, within Dsui_0569 at 569.783 kb on - strand, within Dsui_0569 at 569.827 kb on - strand, within Dsui_0569 at 569.858 kb on + strand at 569.980 kb on - strand, within Dsui_0569 at 569.998 kb on - strand at 570.201 kb on - strand, within Dsui_0570 at 570.250 kb on + strand at 570.393 kb on - strand, within Dsui_0570 at 570.656 kb on - strand, within Dsui_0571 at 570.698 kb on + strand, within Dsui_0571 at 571.022 kb on - strand, within Dsui_0572 at 571.041 kb on - strand, within Dsui_0572 at 571.138 kb on - strand, within Dsui_0572 at 571.171 kb on + strand, within Dsui_0572 at 571.194 kb on + strand, within Dsui_0572 at 571.251 kb on - strand, within Dsui_0572 at 571.297 kb on - strand at 571.317 kb on - strand at 571.406 kb on + strand at 571.416 kb on - strand at 571.458 kb on + strand at 571.534 kb on + strand at 571.534 kb on - strand at 571.535 kb on + strand at 571.535 kb on + strand at 571.535 kb on + strand at 571.535 kb on + strand at 571.543 kb on - strand at 571.543 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 569,110 - Dsui_0568 0.81 -0.1 569,138 - Dsui_0568 0.82 +0.4 569,183 + Dsui_0568 0.84 -3.1 569,191 - Dsui_0568 0.85 -0.3 569,271 - -1.2 569,366 - +0.4 569,449 - +0.4 569,449 - +0.2 569,514 + -1.9 569,514 + +0.4 569,517 - +0.5 569,734 - Dsui_0569 0.36 -1.6 569,783 - Dsui_0569 0.46 -0.9 569,827 - Dsui_0569 0.55 -1.1 569,858 + +0.4 569,980 - Dsui_0569 0.87 -0.6 569,998 - -0.6 570,201 - Dsui_0570 0.28 +0.6 570,250 + -0.6 570,393 - Dsui_0570 0.67 -0.0 570,656 - Dsui_0571 0.34 +1.8 570,698 + Dsui_0571 0.47 -2.4 571,022 - Dsui_0572 0.31 +0.9 571,041 - Dsui_0572 0.36 -0.6 571,138 - Dsui_0572 0.57 +0.1 571,171 + Dsui_0572 0.64 +0.4 571,194 + Dsui_0572 0.69 +0.4 571,251 - Dsui_0572 0.82 -0.5 571,297 - -1.9 571,317 - +1.7 571,406 + +0.4 571,416 - +2.2 571,458 + +0.4 571,534 + -1.2 571,534 - -0.9 571,535 + -1.9 571,535 + -0.6 571,535 + -0.6 571,535 + -2.2 571,543 - +1.4 571,543 - +0.2
Or see this region's nucleotide sequence