Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0533 and Dsui_0534 are separated by 7 nucleotides Dsui_0534 and Dsui_0535 are separated by 31 nucleotides Dsui_0535 and Dsui_0536 are separated by 10 nucleotides Dsui_0536 and Dsui_0537 are separated by 121 nucleotides Dsui_0537 and Dsui_0538 are separated by 55 nucleotides
Dsui_0533: Dsui_0533 - cobyrinic acid a,c-diamide synthase, at 538,485 to 539,792
_0533
Dsui_0534: Dsui_0534 - hypothetical protein, at 539,800 to 540,027
_0534
Dsui_0535: Dsui_0535 - hypothetical protein, at 540,059 to 540,304
_0535
Dsui_0536: Dsui_0536 - hemerythrin-like metal-binding domain-containing protein, at 540,315 to 541,775
_0536
Dsui_0537: Dsui_0537 - conserved protein of DIM6/NTAB family, at 541,897 to 542,436
_0537
Dsui_0538: Dsui_0538 - hypothetical protein, at 542,492 to 543,235
_0538
Position (kb) 540
541
542 Strain fitness (log2 ratio) -2
-1
0
1 at 539.409 kb on - strand, within Dsui_0533 at 539.521 kb on + strand, within Dsui_0533 at 539.577 kb on - strand at 539.689 kb on + strand at 539.719 kb on - strand at 540.029 kb on - strand at 540.029 kb on - strand at 540.039 kb on + strand at 540.094 kb on - strand, within Dsui_0535 at 540.199 kb on + strand, within Dsui_0535 at 540.444 kb on + strand at 540.537 kb on + strand, within Dsui_0536 at 540.671 kb on - strand, within Dsui_0536 at 540.734 kb on + strand, within Dsui_0536 at 540.767 kb on - strand, within Dsui_0536 at 540.787 kb on - strand, within Dsui_0536 at 540.943 kb on + strand, within Dsui_0536 at 540.999 kb on - strand, within Dsui_0536 at 540.999 kb on - strand at 541.001 kb on + strand at 541.009 kb on - strand, within Dsui_0536 at 541.155 kb on + strand, within Dsui_0536 at 541.259 kb on + strand, within Dsui_0536 at 541.503 kb on - strand, within Dsui_0536 at 541.711 kb on - strand at 541.860 kb on - strand at 541.876 kb on - strand at 541.918 kb on + strand at 541.931 kb on - strand at 541.970 kb on + strand, within Dsui_0537 at 542.047 kb on - strand, within Dsui_0537 at 542.087 kb on + strand at 542.089 kb on + strand, within Dsui_0537 at 542.280 kb on - strand, within Dsui_0537 at 542.334 kb on - strand, within Dsui_0537 at 542.577 kb on + strand, within Dsui_0538 at 542.672 kb on + strand, within Dsui_0538
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 539,409 - Dsui_0533 0.71 +0.4 539,521 + Dsui_0533 0.79 -1.2 539,577 - +0.4 539,689 + -0.6 539,719 - +0.4 540,029 - -0.6 540,029 - -0.6 540,039 + -2.0 540,094 - Dsui_0535 0.14 -0.6 540,199 + Dsui_0535 0.57 -0.3 540,444 + +0.6 540,537 + Dsui_0536 0.15 +0.6 540,671 - Dsui_0536 0.24 -2.0 540,734 + Dsui_0536 0.29 -1.6 540,767 - Dsui_0536 0.31 -2.2 540,787 - Dsui_0536 0.32 -1.2 540,943 + Dsui_0536 0.43 +1.4 540,999 - Dsui_0536 0.47 +0.4 540,999 - +0.4 541,001 + -0.6 541,009 - Dsui_0536 0.48 -0.6 541,155 + Dsui_0536 0.57 -2.4 541,259 + Dsui_0536 0.65 -2.0 541,503 - Dsui_0536 0.81 -2.0 541,711 - -2.2 541,860 - -0.6 541,876 - -0.6 541,918 + +0.4 541,931 - -0.6 541,970 + Dsui_0537 0.14 -0.6 542,047 - Dsui_0537 0.28 +0.4 542,087 + +0.4 542,089 + Dsui_0537 0.36 -0.6 542,280 - Dsui_0537 0.71 -1.8 542,334 - Dsui_0537 0.81 +1.4 542,577 + Dsui_0538 0.11 +0.4 542,672 + Dsui_0538 0.24 +0.4
Or see this region's nucleotide sequence