Strain Fitness in Dechlorosoma suillum PS around Dsui_0522

Experiment: ALP with Fusidic 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0520 and Dsui_0521 are separated by 75 nucleotidesDsui_0521 and Dsui_0522 are separated by 94 nucleotidesDsui_0522 and Dsui_0523 overlap by 1 nucleotidesDsui_0523 and Dsui_0524 are separated by 244 nucleotides Dsui_0520: Dsui_0520 - transcriptional regulator, at 527,564 to 528,220 _0520 Dsui_0521: Dsui_0521 - enoyl-CoA hydratase/carnithine racemase, at 528,296 to 529,072 _0521 Dsui_0522: Dsui_0522 - SSS sodium solute transporter, at 529,167 to 530,840 _0522 Dsui_0523: Dsui_0523 - putative membrane protein, at 530,840 to 531,160 _0523 Dsui_0524: Dsui_0524 - putative permease, at 531,405 to 532,208 _0524 Position (kb) 529 530 531Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 528.168 kb on - strandat 528.194 kb on + strandat 528.205 kb on + strandat 528.207 kb on - strandat 528.347 kb on - strandat 528.347 kb on - strandat 528.429 kb on + strand, within Dsui_0521at 528.442 kb on - strand, within Dsui_0521at 528.530 kb on + strand, within Dsui_0521at 528.594 kb on + strand, within Dsui_0521at 528.596 kb on - strand, within Dsui_0521at 528.599 kb on + strand, within Dsui_0521at 528.692 kb on + strand, within Dsui_0521at 528.827 kb on + strand, within Dsui_0521at 528.846 kb on - strand, within Dsui_0521at 528.854 kb on + strand, within Dsui_0521at 528.856 kb on + strand, within Dsui_0521at 528.940 kb on + strand, within Dsui_0521at 528.967 kb on - strand, within Dsui_0521at 528.967 kb on - strand, within Dsui_0521at 529.045 kb on + strandat 529.055 kb on + strandat 529.123 kb on - strandat 529.200 kb on + strandat 529.200 kb on + strandat 529.247 kb on + strandat 529.296 kb on + strandat 529.304 kb on - strandat 529.306 kb on + strandat 529.319 kb on - strandat 529.348 kb on + strand, within Dsui_0522at 529.375 kb on + strand, within Dsui_0522at 529.375 kb on + strand, within Dsui_0522at 529.375 kb on + strand, within Dsui_0522at 529.383 kb on - strand, within Dsui_0522at 529.383 kb on - strand, within Dsui_0522at 529.383 kb on - strand, within Dsui_0522at 529.383 kb on - strand, within Dsui_0522at 529.383 kb on - strand, within Dsui_0522at 529.439 kb on + strand, within Dsui_0522at 529.467 kb on + strand, within Dsui_0522at 529.481 kb on - strand, within Dsui_0522at 529.551 kb on + strand, within Dsui_0522at 529.613 kb on + strand, within Dsui_0522at 529.632 kb on - strand, within Dsui_0522at 529.662 kb on - strand, within Dsui_0522at 529.669 kb on - strand, within Dsui_0522at 529.681 kb on - strand, within Dsui_0522at 529.743 kb on - strand, within Dsui_0522at 529.781 kb on + strand, within Dsui_0522at 529.819 kb on + strand, within Dsui_0522at 529.855 kb on + strand, within Dsui_0522at 529.868 kb on - strand, within Dsui_0522at 529.873 kb on - strand, within Dsui_0522at 530.025 kb on + strand, within Dsui_0522at 530.046 kb on - strand, within Dsui_0522at 530.046 kb on - strand, within Dsui_0522at 530.071 kb on + strand, within Dsui_0522at 530.079 kb on - strand, within Dsui_0522at 530.215 kb on - strand, within Dsui_0522at 530.240 kb on - strand, within Dsui_0522at 530.273 kb on - strand, within Dsui_0522at 530.354 kb on + strand, within Dsui_0522at 530.385 kb on + strand, within Dsui_0522at 530.402 kb on + strand, within Dsui_0522at 530.441 kb on - strand, within Dsui_0522at 530.537 kb on - strand, within Dsui_0522at 530.543 kb on + strand, within Dsui_0522at 530.550 kb on + strand, within Dsui_0522at 530.635 kb on + strand, within Dsui_0522at 530.635 kb on + strand, within Dsui_0522at 530.685 kb on + strandat 530.813 kb on + strandat 530.862 kb on + strandat 530.944 kb on + strand, within Dsui_0523at 530.991 kb on + strand, within Dsui_0523at 531.077 kb on + strand, within Dsui_0523at 531.155 kb on + strandat 531.163 kb on - strandat 531.165 kb on - strandat 531.168 kb on - strandat 531.210 kb on + strandat 531.217 kb on + strandat 531.217 kb on + strandat 531.222 kb on + strandat 531.224 kb on - strandat 531.225 kb on - strandat 531.230 kb on - strandat 531.260 kb on + strandat 531.329 kb on + strandat 531.329 kb on + strandat 531.492 kb on + strand, within Dsui_0524at 531.546 kb on - strand, within Dsui_0524at 531.613 kb on - strand, within Dsui_0524at 531.626 kb on - strand, within Dsui_0524at 531.655 kb on - strand, within Dsui_0524at 531.703 kb on + strand, within Dsui_0524at 531.704 kb on + strand, within Dsui_0524

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml
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528,168 - -1.2
528,194 + -3.0
528,205 + -0.9
528,207 - +0.4
528,347 - -3.0
528,347 - -0.6
528,429 + Dsui_0521 0.17 -0.6
528,442 - Dsui_0521 0.19 -1.2
528,530 + Dsui_0521 0.30 +0.4
528,594 + Dsui_0521 0.38 +2.9
528,596 - Dsui_0521 0.39 -0.6
528,599 + Dsui_0521 0.39 -2.0
528,692 + Dsui_0521 0.51 -2.2
528,827 + Dsui_0521 0.68 -1.2
528,846 - Dsui_0521 0.71 -0.6
528,854 + Dsui_0521 0.72 -1.6
528,856 + Dsui_0521 0.72 -0.1
528,940 + Dsui_0521 0.83 -1.8
528,967 - Dsui_0521 0.86 -1.6
528,967 - Dsui_0521 0.86 -0.6
529,045 + -1.9
529,055 + -0.3
529,123 - +0.4
529,200 + -0.6
529,200 + -1.2
529,247 + -2.4
529,296 + -1.6
529,304 - -1.2
529,306 + -1.2
529,319 - -2.0
529,348 + Dsui_0522 0.11 -2.0
529,375 + Dsui_0522 0.12 +0.4
529,375 + Dsui_0522 0.12 -0.6
529,375 + Dsui_0522 0.12 -1.2
529,383 - Dsui_0522 0.13 -3.2
529,383 - Dsui_0522 0.13 -1.2
529,383 - Dsui_0522 0.13 -0.6
529,383 - Dsui_0522 0.13 +2.4
529,383 - Dsui_0522 0.13 +0.4
529,439 + Dsui_0522 0.16 +0.4
529,467 + Dsui_0522 0.18 -2.4
529,481 - Dsui_0522 0.19 -3.2
529,551 + Dsui_0522 0.23 -1.2
529,613 + Dsui_0522 0.27 -1.6
529,632 - Dsui_0522 0.28 -1.2
529,662 - Dsui_0522 0.30 -0.9
529,669 - Dsui_0522 0.30 -0.6
529,681 - Dsui_0522 0.31 -0.8
529,743 - Dsui_0522 0.34 +0.4
529,781 + Dsui_0522 0.37 -0.6
529,819 + Dsui_0522 0.39 -0.6
529,855 + Dsui_0522 0.41 -1.2
529,868 - Dsui_0522 0.42 -0.6
529,873 - Dsui_0522 0.42 +0.4
530,025 + Dsui_0522 0.51 +0.4
530,046 - Dsui_0522 0.53 -1.6
530,046 - Dsui_0522 0.53 -1.6
530,071 + Dsui_0522 0.54 +0.2
530,079 - Dsui_0522 0.54 -1.2
530,215 - Dsui_0522 0.63 -1.2
530,240 - Dsui_0522 0.64 -1.2
530,273 - Dsui_0522 0.66 -1.6
530,354 + Dsui_0522 0.71 -0.6
530,385 + Dsui_0522 0.73 -2.0
530,402 + Dsui_0522 0.74 -0.6
530,441 - Dsui_0522 0.76 -2.0
530,537 - Dsui_0522 0.82 -1.5
530,543 + Dsui_0522 0.82 +0.4
530,550 + Dsui_0522 0.83 -1.2
530,635 + Dsui_0522 0.88 +0.4
530,635 + Dsui_0522 0.88 -0.6
530,685 + -1.6
530,813 + -1.2
530,862 + -1.6
530,944 + Dsui_0523 0.32 -2.6
530,991 + Dsui_0523 0.47 +0.4
531,077 + Dsui_0523 0.74 -0.6
531,155 + -0.6
531,163 - -0.6
531,165 - +0.0
531,168 - -1.6
531,210 + +0.4
531,217 + -0.6
531,217 + +0.4
531,222 + -1.2
531,224 - +0.4
531,225 - +0.4
531,230 - -1.6
531,260 + +0.4
531,329 + -1.6
531,329 + -0.6
531,492 + Dsui_0524 0.11 -0.8
531,546 - Dsui_0524 0.18 -0.3
531,613 - Dsui_0524 0.26 -0.3
531,626 - Dsui_0524 0.27 +0.2
531,655 - Dsui_0524 0.31 -2.2
531,703 + Dsui_0524 0.37 -1.2
531,704 + Dsui_0524 0.37 -2.0

Or see this region's nucleotide sequence