Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0454 and Dsui_0455 are separated by 3 nucleotides Dsui_0455 and Dsui_0456 are separated by 90 nucleotides Dsui_0456 and Dsui_0457 are separated by 7 nucleotides Dsui_0457 and Dsui_0458 are separated by 44 nucleotides
Dsui_0454: Dsui_0454 - hypothetical protein, at 459,194 to 460,024
_0454
Dsui_0455: Dsui_0455 - putative integral membrane protein, at 460,028 to 460,786
_0455
Dsui_0456: Dsui_0456 - homoserine kinase, Neisseria type, at 460,877 to 461,818
_0456
Dsui_0457: Dsui_0457 - Protein of unknown function (DUF2782), at 461,826 to 462,176
_0457
Dsui_0458: Dsui_0458 - TIGR00730 family protein, at 462,221 to 462,949
_0458
Position (kb) 460
461
462 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 459.942 kb on - strand at 459.973 kb on - strand at 460.021 kb on + strand at 460.059 kb on + strand at 460.067 kb on - strand at 460.067 kb on - strand at 460.140 kb on + strand at 460.148 kb on - strand, within Dsui_0455 at 460.226 kb on - strand, within Dsui_0455 at 460.241 kb on - strand, within Dsui_0455 at 460.435 kb on + strand at 460.439 kb on - strand, within Dsui_0455 at 460.449 kb on - strand, within Dsui_0455 at 460.609 kb on - strand, within Dsui_0455 at 460.611 kb on + strand at 460.619 kb on - strand, within Dsui_0455 at 460.645 kb on - strand, within Dsui_0455 at 460.650 kb on + strand at 460.926 kb on - strand at 461.120 kb on - strand, within Dsui_0456 at 461.139 kb on - strand, within Dsui_0456 at 461.226 kb on + strand, within Dsui_0456 at 461.257 kb on - strand, within Dsui_0456 at 461.276 kb on + strand, within Dsui_0456 at 461.290 kb on - strand, within Dsui_0456 at 461.444 kb on + strand, within Dsui_0456 at 461.452 kb on - strand, within Dsui_0456 at 461.456 kb on + strand, within Dsui_0456 at 461.551 kb on + strand, within Dsui_0456 at 461.655 kb on + strand, within Dsui_0456 at 461.944 kb on - strand, within Dsui_0457 at 461.950 kb on - strand, within Dsui_0457 at 462.132 kb on + strand, within Dsui_0457 at 462.243 kb on - strand at 462.254 kb on - strand at 462.259 kb on + strand at 462.267 kb on - strand at 462.273 kb on + strand at 462.329 kb on + strand, within Dsui_0458 at 462.334 kb on + strand, within Dsui_0458 at 462.334 kb on + strand at 462.342 kb on - strand, within Dsui_0458 at 462.342 kb on - strand, within Dsui_0458 at 462.492 kb on - strand, within Dsui_0458 at 462.517 kb on + strand at 462.525 kb on - strand, within Dsui_0458 at 462.601 kb on - strand, within Dsui_0458 at 462.728 kb on - strand, within Dsui_0458 at 462.754 kb on + strand, within Dsui_0458 at 462.762 kb on - strand, within Dsui_0458 at 462.774 kb on + strand at 462.791 kb on + strand, within Dsui_0458
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 459,942 - -0.2 459,973 - -1.0 460,021 + -0.6 460,059 + +0.4 460,067 - +0.6 460,067 - -0.3 460,140 + +0.4 460,148 - Dsui_0455 0.16 +0.2 460,226 - Dsui_0455 0.26 -0.7 460,241 - Dsui_0455 0.28 -0.4 460,435 + +0.4 460,439 - Dsui_0455 0.54 -0.2 460,449 - Dsui_0455 0.55 -0.5 460,609 - Dsui_0455 0.77 +0.5 460,611 + +0.4 460,619 - Dsui_0455 0.78 -0.3 460,645 - Dsui_0455 0.81 -0.4 460,650 + -1.2 460,926 - -0.1 461,120 - Dsui_0456 0.26 +0.0 461,139 - Dsui_0456 0.28 -0.4 461,226 + Dsui_0456 0.37 -1.6 461,257 - Dsui_0456 0.40 -0.4 461,276 + Dsui_0456 0.42 -2.4 461,290 - Dsui_0456 0.44 -0.2 461,444 + Dsui_0456 0.60 +0.4 461,452 - Dsui_0456 0.61 -0.5 461,456 + Dsui_0456 0.61 +0.4 461,551 + Dsui_0456 0.72 -0.6 461,655 + Dsui_0456 0.83 +0.4 461,944 - Dsui_0457 0.34 -3.0 461,950 - Dsui_0457 0.35 -2.9 462,132 + Dsui_0457 0.87 +0.4 462,243 - -0.5 462,254 - -0.4 462,259 + -1.2 462,267 - -0.8 462,273 + -0.6 462,329 + Dsui_0458 0.15 -1.2 462,334 + Dsui_0458 0.16 -1.6 462,334 + +0.4 462,342 - Dsui_0458 0.17 +0.8 462,342 - Dsui_0458 0.17 +0.4 462,492 - Dsui_0458 0.37 +0.0 462,517 + +0.4 462,525 - Dsui_0458 0.42 -1.5 462,601 - Dsui_0458 0.52 +0.6 462,728 - Dsui_0458 0.70 -0.1 462,754 + Dsui_0458 0.73 -1.6 462,762 - Dsui_0458 0.74 -0.4 462,774 + +0.4 462,791 + Dsui_0458 0.78 -0.6
Or see this region's nucleotide sequence