Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0393 and Dsui_0394 are separated by 65 nucleotides Dsui_0394 and Dsui_0395 are separated by 22 nucleotides Dsui_0395 and Dsui_0396 are separated by 124 nucleotides
Dsui_0393: Dsui_0393 - glycosyltransferase, at 391,436 to 392,680
_0393
Dsui_0394: Dsui_0394 - sugar kinase, ribokinase, at 392,746 to 393,681
_0394
Dsui_0395: Dsui_0395 - outer membrane lipoprotein, at 393,704 to 394,171
_0395
Dsui_0396: Dsui_0396 - putative hemolysin, at 394,296 to 395,054
_0396
Position (kb) 392
393
394 Strain fitness (log2 ratio) -2
-1
0
1 at 391.748 kb on + strand at 391.778 kb on + strand, within Dsui_0393 at 391.799 kb on + strand, within Dsui_0393 at 391.807 kb on - strand, within Dsui_0393 at 391.903 kb on - strand at 391.903 kb on - strand at 391.913 kb on - strand at 391.938 kb on - strand, within Dsui_0393 at 392.061 kb on - strand, within Dsui_0393 at 392.081 kb on - strand at 392.099 kb on - strand at 392.125 kb on + strand, within Dsui_0393 at 392.194 kb on - strand at 392.237 kb on + strand, within Dsui_0393 at 392.378 kb on - strand at 392.396 kb on - strand at 392.437 kb on + strand at 392.445 kb on - strand, within Dsui_0393 at 392.518 kb on + strand, within Dsui_0393 at 392.680 kb on + strand at 392.705 kb on + strand at 392.748 kb on - strand at 392.765 kb on - strand at 392.821 kb on - strand at 392.912 kb on + strand, within Dsui_0394 at 392.922 kb on + strand, within Dsui_0394 at 393.001 kb on - strand at 393.001 kb on - strand at 393.001 kb on - strand at 393.033 kb on + strand, within Dsui_0394 at 393.041 kb on - strand at 393.051 kb on + strand, within Dsui_0394 at 393.054 kb on + strand, within Dsui_0394 at 393.057 kb on - strand at 393.103 kb on + strand, within Dsui_0394 at 393.110 kb on + strand, within Dsui_0394 at 393.128 kb on - strand, within Dsui_0394 at 393.207 kb on - strand, within Dsui_0394 at 393.252 kb on - strand at 393.277 kb on + strand, within Dsui_0394 at 393.299 kb on - strand, within Dsui_0394 at 393.319 kb on - strand, within Dsui_0394 at 393.423 kb on - strand, within Dsui_0394 at 393.498 kb on - strand at 393.514 kb on + strand, within Dsui_0394 at 393.519 kb on + strand, within Dsui_0394 at 393.519 kb on + strand, within Dsui_0394 at 393.683 kb on - strand at 393.795 kb on - strand at 393.976 kb on + strand, within Dsui_0395 at 394.091 kb on - strand, within Dsui_0395 at 394.172 kb on + strand at 394.172 kb on + strand at 394.187 kb on - strand at 394.287 kb on + strand at 394.301 kb on - strand at 394.362 kb on - strand at 394.507 kb on - strand, within Dsui_0396 at 394.529 kb on + strand, within Dsui_0396 at 394.625 kb on - strand, within Dsui_0396 at 394.662 kb on - strand, within Dsui_0396
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 391,748 + +0.5 391,778 + Dsui_0393 0.27 +0.5 391,799 + Dsui_0393 0.29 -1.9 391,807 - Dsui_0393 0.30 +0.5 391,903 - +0.5 391,903 - -0.5 391,913 - +0.5 391,938 - Dsui_0393 0.40 -1.1 392,061 - Dsui_0393 0.50 -1.5 392,081 - +0.5 392,099 - -0.5 392,125 + Dsui_0393 0.55 -1.5 392,194 - +0.5 392,237 + Dsui_0393 0.64 -1.1 392,378 - +0.5 392,396 - -0.5 392,437 + -0.5 392,445 - Dsui_0393 0.81 +0.5 392,518 + Dsui_0393 0.87 +1.1 392,680 + -2.1 392,705 + -0.4 392,748 - +0.5 392,765 - -0.5 392,821 - -1.9 392,912 + Dsui_0394 0.18 -0.1 392,922 + Dsui_0394 0.19 +0.4 393,001 - -1.1 393,001 - +0.5 393,001 - +0.5 393,033 + Dsui_0394 0.31 +0.8 393,041 - -0.5 393,051 + Dsui_0394 0.33 +0.7 393,054 + Dsui_0394 0.33 +0.4 393,057 - +0.5 393,103 + Dsui_0394 0.38 -0.2 393,110 + Dsui_0394 0.39 -0.1 393,128 - Dsui_0394 0.41 +0.5 393,207 - Dsui_0394 0.49 +0.5 393,252 - +0.5 393,277 + Dsui_0394 0.57 +0.4 393,299 - Dsui_0394 0.59 -1.1 393,319 - Dsui_0394 0.61 -1.1 393,423 - Dsui_0394 0.72 -0.5 393,498 - +0.5 393,514 + Dsui_0394 0.82 +0.9 393,519 + Dsui_0394 0.83 +0.5 393,519 + Dsui_0394 0.83 +0.4 393,683 - -0.1 393,795 - +0.5 393,976 + Dsui_0395 0.58 -1.3 394,091 - Dsui_0395 0.83 -1.5 394,172 + +0.0 394,172 + -1.0 394,187 - +1.1 394,287 + -0.0 394,301 - +0.5 394,362 - -2.1 394,507 - Dsui_0396 0.28 -0.9 394,529 + Dsui_0396 0.31 -0.5 394,625 - Dsui_0396 0.43 +0.5 394,662 - Dsui_0396 0.48 -1.1
Or see this region's nucleotide sequence