Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0132 and Dsui_0133 are separated by 145 nucleotides Dsui_0133 and Dsui_0134 are separated by 471 nucleotides
Dsui_0132: Dsui_0132 - aspartate/tyrosine/aromatic aminotransferase, at 133,146 to 134,303
_0132
Dsui_0133: Dsui_0133 - hypothetical protein, at 134,449 to 135,519
_0133
Dsui_0134: Dsui_0134 - negative regulator of beta-lactamase expression, at 135,991 to 136,563
_0134
Position (kb)
134
135
136 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 133.467 kb on - strand, within Dsui_0132 at 133.472 kb on - strand, within Dsui_0132 at 133.554 kb on - strand at 133.622 kb on + strand, within Dsui_0132 at 133.622 kb on + strand, within Dsui_0132 at 133.649 kb on + strand, within Dsui_0132 at 133.650 kb on + strand, within Dsui_0132 at 133.684 kb on + strand, within Dsui_0132 at 133.685 kb on + strand, within Dsui_0132 at 133.822 kb on - strand, within Dsui_0132 at 133.835 kb on - strand, within Dsui_0132 at 133.840 kb on - strand, within Dsui_0132 at 133.885 kb on + strand at 133.895 kb on - strand, within Dsui_0132 at 133.895 kb on - strand, within Dsui_0132 at 133.961 kb on - strand, within Dsui_0132 at 133.998 kb on - strand, within Dsui_0132 at 134.049 kb on - strand at 134.095 kb on - strand, within Dsui_0132 at 134.106 kb on - strand, within Dsui_0132 at 134.140 kb on + strand, within Dsui_0132 at 134.243 kb on + strand at 134.264 kb on + strand at 134.305 kb on - strand at 134.319 kb on + strand at 134.352 kb on - strand at 134.412 kb on + strand at 134.412 kb on + strand at 134.414 kb on - strand at 134.514 kb on - strand at 134.587 kb on + strand, within Dsui_0133 at 134.590 kb on - strand, within Dsui_0133 at 134.626 kb on - strand, within Dsui_0133 at 135.453 kb on - strand at 135.472 kb on + strand at 135.494 kb on + strand at 135.572 kb on + strand at 135.580 kb on - strand at 135.727 kb on + strand at 135.735 kb on - strand at 135.735 kb on - strand at 135.812 kb on - strand at 135.819 kb on - strand at 135.863 kb on + strand at 135.894 kb on + strand at 135.902 kb on - strand at 135.902 kb on - strand at 135.902 kb on - strand at 135.902 kb on - strand at 135.902 kb on - strand at 135.924 kb on + strand at 135.926 kb on - strand at 135.926 kb on - strand at 135.932 kb on - strand at 135.932 kb on - strand at 135.947 kb on - strand at 136.005 kb on - strand at 136.007 kb on + strand at 136.007 kb on + strand at 136.015 kb on - strand at 136.015 kb on - strand at 136.023 kb on - strand at 136.068 kb on - strand, within Dsui_0134 at 136.073 kb on + strand, within Dsui_0134 at 136.081 kb on - strand, within Dsui_0134 at 136.129 kb on - strand, within Dsui_0134 at 136.152 kb on - strand at 136.185 kb on + strand, within Dsui_0134 at 136.260 kb on - strand, within Dsui_0134 at 136.260 kb on - strand, within Dsui_0134 at 136.270 kb on - strand, within Dsui_0134 at 136.299 kb on + strand at 136.378 kb on - strand, within Dsui_0134 at 136.384 kb on + strand, within Dsui_0134 at 136.445 kb on + strand, within Dsui_0134 at 136.456 kb on + strand, within Dsui_0134 at 136.489 kb on - strand, within Dsui_0134 at 136.518 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 133,467 - Dsui_0132 0.28 -0.6 133,472 - Dsui_0132 0.28 -1.3 133,554 - +0.7 133,622 + Dsui_0132 0.41 +0.9 133,622 + Dsui_0132 0.41 -0.6 133,649 + Dsui_0132 0.43 +0.7 133,650 + Dsui_0132 0.44 -0.4 133,684 + Dsui_0132 0.46 +0.6 133,685 + Dsui_0132 0.47 -1.6 133,822 - Dsui_0132 0.58 -0.3 133,835 - Dsui_0132 0.59 -0.3 133,840 - Dsui_0132 0.60 -0.3 133,885 + +0.7 133,895 - Dsui_0132 0.65 -0.3 133,895 - Dsui_0132 0.65 -2.1 133,961 - Dsui_0132 0.70 +0.2 133,998 - Dsui_0132 0.74 -0.3 134,049 - +0.7 134,095 - Dsui_0132 0.82 +0.7 134,106 - Dsui_0132 0.83 +0.7 134,140 + Dsui_0132 0.86 -1.8 134,243 + +0.6 134,264 + +0.6 134,305 - +0.7 134,319 + +0.7 134,352 - +0.2 134,412 + -1.3 134,412 + +0.2 134,414 - +0.9 134,514 - +0.0 134,587 + Dsui_0133 0.13 +0.7 134,590 - Dsui_0133 0.13 +0.3 134,626 - Dsui_0133 0.17 +0.4 135,453 - +0.9 135,472 + +0.7 135,494 + +0.7 135,572 + -0.8 135,580 - +0.7 135,727 + -0.3 135,735 - +0.0 135,735 - +0.2 135,812 - +0.1 135,819 - -0.9 135,863 + -0.8 135,894 + -2.4 135,902 - -0.2 135,902 - +0.4 135,902 - +4.1 135,902 - +0.1 135,902 - +0.1 135,924 + -1.8 135,926 - +0.4 135,926 - +0.8 135,932 - +0.3 135,932 - +1.1 135,947 - +0.9 136,005 - -0.8 136,007 + +0.7 136,007 + -0.8 136,015 - -2.8 136,015 - +0.7 136,023 - -1.6 136,068 - Dsui_0134 0.13 +0.7 136,073 + Dsui_0134 0.14 +0.7 136,081 - Dsui_0134 0.16 -2.7 136,129 - Dsui_0134 0.24 -2.3 136,152 - +0.7 136,185 + Dsui_0134 0.34 -0.8 136,260 - Dsui_0134 0.47 -1.6 136,260 - Dsui_0134 0.47 +1.7 136,270 - Dsui_0134 0.49 -0.8 136,299 + -0.3 136,378 - Dsui_0134 0.68 +0.7 136,384 + Dsui_0134 0.69 -0.3 136,445 + Dsui_0134 0.79 +0.7 136,456 + Dsui_0134 0.81 -0.3 136,489 - Dsui_0134 0.87 +0.7 136,518 + +0.7
Or see this region's nucleotide sequence