Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0114 and Dsui_0115 are separated by 203 nucleotides Dsui_0115 and Dsui_0116 are separated by 116 nucleotides Dsui_0116 and Dsui_0117 are separated by 42 nucleotides
Dsui_0114: Dsui_0114 - ammonium transporter, at 112,311 to 113,750
_0114
Dsui_0115: Dsui_0115 - hypothetical protein, at 113,954 to 114,448
_0115
Dsui_0116: Dsui_0116 - alkylhydroperoxidase AhpD family core domain protein, at 114,565 to 114,924
_0116
Dsui_0117: Dsui_0117 - methyl-accepting chemotaxis protein, at 114,967 to 116,610
_0117
Position (kb)
114
115 Strain fitness (log2 ratio)
-2
-1
0
1 at 113.636 kb on + strand at 113.644 kb on - strand at 113.685 kb on - strand at 113.726 kb on - strand at 113.751 kb on - strand at 113.795 kb on - strand at 113.805 kb on - strand at 113.896 kb on + strand at 113.896 kb on + strand at 113.904 kb on - strand at 113.904 kb on - strand at 113.985 kb on - strand at 113.999 kb on + strand at 114.006 kb on - strand, within Dsui_0115 at 114.030 kb on - strand, within Dsui_0115 at 114.051 kb on - strand, within Dsui_0115 at 114.062 kb on + strand, within Dsui_0115 at 114.121 kb on + strand, within Dsui_0115 at 114.185 kb on - strand, within Dsui_0115 at 114.206 kb on - strand, within Dsui_0115 at 114.285 kb on + strand, within Dsui_0115 at 114.293 kb on - strand, within Dsui_0115 at 114.331 kb on - strand, within Dsui_0115 at 114.421 kb on + strand at 114.444 kb on - strand at 114.496 kb on - strand at 114.499 kb on + strand at 114.514 kb on + strand at 114.562 kb on + strand at 114.615 kb on - strand at 114.621 kb on + strand at 114.775 kb on + strand, within Dsui_0116 at 114.775 kb on + strand, within Dsui_0116 at 114.826 kb on - strand, within Dsui_0116 at 114.853 kb on + strand, within Dsui_0116 at 114.866 kb on - strand at 114.885 kb on - strand, within Dsui_0116 at 114.889 kb on - strand at 114.900 kb on - strand at 115.004 kb on + strand at 115.012 kb on - strand at 115.016 kb on + strand at 115.024 kb on - strand at 115.086 kb on + strand at 115.142 kb on - strand, within Dsui_0117 at 115.185 kb on + strand, within Dsui_0117 at 115.256 kb on - strand, within Dsui_0117 at 115.369 kb on - strand, within Dsui_0117 at 115.411 kb on + strand, within Dsui_0117 at 115.419 kb on - strand, within Dsui_0117 at 115.463 kb on + strand, within Dsui_0117 at 115.601 kb on - strand, within Dsui_0117 at 115.728 kb on + strand at 115.738 kb on + strand at 115.738 kb on + strand, within Dsui_0117 at 115.738 kb on + strand, within Dsui_0117 at 115.741 kb on - strand at 115.766 kb on + strand, within Dsui_0117 at 115.783 kb on + strand, within Dsui_0117 at 115.789 kb on + strand, within Dsui_0117 at 115.794 kb on + strand, within Dsui_0117 at 115.804 kb on + strand, within Dsui_0117 at 115.812 kb on - strand, within Dsui_0117 at 115.829 kb on - strand, within Dsui_0117 at 115.835 kb on + strand, within Dsui_0117 at 115.874 kb on + strand, within Dsui_0117 at 115.904 kb on + strand, within Dsui_0117 at 115.904 kb on + strand, within Dsui_0117 at 115.911 kb on + strand, within Dsui_0117
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 113,636 + +0.7 113,644 - +0.4 113,685 - -2.3 113,726 - -1.4 113,751 - -0.8 113,795 - +0.6 113,805 - +0.5 113,896 + +0.7 113,896 + +0.7 113,904 - +1.7 113,904 - +0.7 113,985 - +0.4 113,999 + -0.8 114,006 - Dsui_0115 0.11 +0.6 114,030 - Dsui_0115 0.15 +1.2 114,051 - Dsui_0115 0.20 +0.8 114,062 + Dsui_0115 0.22 -1.8 114,121 + Dsui_0115 0.34 -1.8 114,185 - Dsui_0115 0.47 -0.1 114,206 - Dsui_0115 0.51 +0.8 114,285 + Dsui_0115 0.67 -1.6 114,293 - Dsui_0115 0.68 +0.4 114,331 - Dsui_0115 0.76 -0.5 114,421 + +0.7 114,444 - -0.7 114,496 - -0.3 114,499 + -0.3 114,514 + +0.7 114,562 + -0.3 114,615 - +0.7 114,621 + +0.7 114,775 + Dsui_0116 0.58 -0.3 114,775 + Dsui_0116 0.58 -0.8 114,826 - Dsui_0116 0.72 -2.1 114,853 + Dsui_0116 0.80 -1.3 114,866 - -0.8 114,885 - Dsui_0116 0.89 -1.3 114,889 - -0.8 114,900 - -0.3 115,004 + +0.7 115,012 - -1.8 115,016 + -0.8 115,024 - -0.3 115,086 + +0.7 115,142 - Dsui_0117 0.11 -1.8 115,185 + Dsui_0117 0.13 -1.8 115,256 - Dsui_0117 0.18 +1.7 115,369 - Dsui_0117 0.24 +0.7 115,411 + Dsui_0117 0.27 -0.3 115,419 - Dsui_0117 0.27 -1.8 115,463 + Dsui_0117 0.30 -0.8 115,601 - Dsui_0117 0.39 -0.3 115,728 + +0.7 115,738 + +0.7 115,738 + Dsui_0117 0.47 +0.7 115,738 + Dsui_0117 0.47 +0.7 115,741 - +0.7 115,766 + Dsui_0117 0.49 -0.3 115,783 + Dsui_0117 0.50 -0.8 115,789 + Dsui_0117 0.50 -0.3 115,794 + Dsui_0117 0.50 -1.6 115,804 + Dsui_0117 0.51 +0.7 115,812 - Dsui_0117 0.51 +0.7 115,829 - Dsui_0117 0.52 -0.8 115,835 + Dsui_0117 0.53 +0.7 115,874 + Dsui_0117 0.55 -0.3 115,904 + Dsui_0117 0.57 -0.3 115,904 + Dsui_0117 0.57 +0.7 115,911 + Dsui_0117 0.57 -0.8
Or see this region's nucleotide sequence