Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0096 and Dsui_0097 are separated by 119 nucleotides Dsui_0097 and Dsui_0098 are separated by 88 nucleotides Dsui_0098 and Dsui_0099 are separated by 3 nucleotides Dsui_0099 and Dsui_0100 overlap by 4 nucleotides Dsui_0100 and Dsui_0101 are separated by 166 nucleotides
Dsui_0096: Dsui_0096 - methyl-accepting chemotaxis protein, at 95,373 to 97,190
_0096
Dsui_0097: Dsui_0097 - putative metal-binding protein, at 97,310 to 97,750
_0097
Dsui_0098: Dsui_0098 - Uncharacterized protein family UPF0057, at 97,839 to 98,033
_0098
Dsui_0099: Dsui_0099 - putative periplasmic or secreted lipoprotein, at 98,037 to 98,696
_0099
Dsui_0100: Dsui_0100 - phosphoheptose isomerase, at 98,693 to 99,286
_0100
Dsui_0101: Dsui_0101 - exonuclease, DNA polymerase III, epsilon subunit family, at 99,453 to 100,919
_0101
Position (kb)
98
99 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 97.057 kb on - strand at 97.057 kb on - strand at 97.072 kb on + strand at 97.249 kb on + strand at 97.381 kb on - strand, within Dsui_0097 at 97.442 kb on - strand at 97.444 kb on + strand, within Dsui_0097 at 97.473 kb on + strand, within Dsui_0097 at 97.473 kb on + strand, within Dsui_0097 at 97.478 kb on + strand, within Dsui_0097 at 97.535 kb on - strand, within Dsui_0097 at 97.535 kb on - strand, within Dsui_0097 at 97.535 kb on - strand, within Dsui_0097 at 97.540 kb on - strand, within Dsui_0097 at 97.576 kb on - strand, within Dsui_0097 at 97.618 kb on + strand, within Dsui_0097 at 97.626 kb on - strand, within Dsui_0097 at 97.687 kb on - strand at 97.709 kb on - strand at 97.739 kb on + strand at 97.744 kb on + strand at 97.744 kb on + strand at 97.744 kb on + strand at 97.744 kb on + strand at 97.752 kb on - strand at 98.004 kb on + strand, within Dsui_0098 at 98.066 kb on + strand at 98.066 kb on + strand at 98.098 kb on + strand at 98.106 kb on - strand, within Dsui_0099 at 98.158 kb on - strand, within Dsui_0099 at 98.213 kb on + strand, within Dsui_0099 at 98.243 kb on - strand, within Dsui_0099 at 98.407 kb on + strand, within Dsui_0099 at 98.407 kb on + strand, within Dsui_0099 at 98.530 kb on - strand, within Dsui_0099 at 98.710 kb on + strand at 99.298 kb on - strand at 99.339 kb on - strand at 99.423 kb on - strand at 99.423 kb on - strand at 99.423 kb on - strand at 99.423 kb on - strand at 99.431 kb on + strand at 99.454 kb on - strand at 99.504 kb on + strand at 99.512 kb on - strand at 99.512 kb on - strand at 99.589 kb on - strand at 99.594 kb on + strand at 99.651 kb on - strand, within Dsui_0101
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 97,057 - -1.6 97,057 - -0.8 97,072 + -0.0 97,249 + +0.2 97,381 - Dsui_0097 0.16 -0.3 97,442 - +0.7 97,444 + Dsui_0097 0.30 +0.0 97,473 + Dsui_0097 0.37 +0.3 97,473 + Dsui_0097 0.37 +0.1 97,478 + Dsui_0097 0.38 +0.2 97,535 - Dsui_0097 0.51 +0.3 97,535 - Dsui_0097 0.51 -3.1 97,535 - Dsui_0097 0.51 -1.4 97,540 - Dsui_0097 0.52 -0.8 97,576 - Dsui_0097 0.60 +0.7 97,618 + Dsui_0097 0.70 +0.0 97,626 - Dsui_0097 0.72 -0.8 97,687 - +0.7 97,709 - +3.1 97,739 + -0.1 97,744 + +0.0 97,744 + -0.2 97,744 + +1.1 97,744 + -0.1 97,752 - +0.9 98,004 + Dsui_0098 0.85 -0.3 98,066 + +0.7 98,066 + +0.7 98,098 + -1.3 98,106 - Dsui_0099 0.10 -0.5 98,158 - Dsui_0099 0.18 -3.1 98,213 + Dsui_0099 0.27 -0.8 98,243 - Dsui_0099 0.31 -3.6 98,407 + Dsui_0099 0.56 -0.8 98,407 + Dsui_0099 0.56 -0.3 98,530 - Dsui_0099 0.75 -1.8 98,710 + -1.6 99,298 - +4.7 99,339 - -1.8 99,423 - -1.6 99,423 - -0.3 99,423 - +0.7 99,423 - +0.7 99,431 + -1.2 99,454 - -0.3 99,504 + -1.3 99,512 - +0.7 99,512 - +0.7 99,589 - +0.7 99,594 + -0.9 99,651 - Dsui_0101 0.13 +0.7
Or see this region's nucleotide sequence