Strain Fitness in Dechlorosoma suillum PS around Dsui_0090

Experiment: ALP with Fusidic 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0089 and Dsui_0090 are separated by 132 nucleotidesDsui_0090 and Dsui_0091 are separated by 19 nucleotides Dsui_0089: Dsui_0089 - methyl-accepting chemotaxis protein, at 87,164 to 88,798 _0089 Dsui_0090: Dsui_0090 - Sua5/YciO/YrdC/YwlC family protein, at 88,931 to 89,941 _0090 Dsui_0091: Dsui_0091 - phosphoribosylaminoimidazole carboxylase, PurK protein, at 89,961 to 91,115 _0091 Position (kb) 88 89 90Strain fitness (log2 ratio) -2 -1 0 1at 87.976 kb on + strand, within Dsui_0089at 87.990 kb on + strand, within Dsui_0089at 88.064 kb on + strand, within Dsui_0089at 88.067 kb on + strandat 88.122 kb on - strand, within Dsui_0089at 88.145 kb on - strand, within Dsui_0089at 88.145 kb on - strand, within Dsui_0089at 88.145 kb on - strand, within Dsui_0089at 88.198 kb on + strand, within Dsui_0089at 88.218 kb on - strand, within Dsui_0089at 88.228 kb on - strand, within Dsui_0089at 88.284 kb on + strand, within Dsui_0089at 88.292 kb on - strand, within Dsui_0089at 88.297 kb on - strand, within Dsui_0089at 88.297 kb on - strand, within Dsui_0089at 88.354 kb on + strand, within Dsui_0089at 88.425 kb on + strand, within Dsui_0089at 88.433 kb on - strand, within Dsui_0089at 88.433 kb on - strand, within Dsui_0089at 88.454 kb on - strand, within Dsui_0089at 88.545 kb on + strand, within Dsui_0089at 88.557 kb on + strandat 88.631 kb on + strand, within Dsui_0089at 88.719 kb on + strandat 88.729 kb on + strandat 88.738 kb on - strandat 88.743 kb on - strandat 88.781 kb on - strandat 88.781 kb on - strandat 88.781 kb on - strandat 88.782 kb on - strandat 88.782 kb on - strandat 88.782 kb on - strandat 88.812 kb on - strandat 88.820 kb on + strandat 88.844 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml
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87,976 + Dsui_0089 0.50 +0.7
87,990 + Dsui_0089 0.51 +0.7
88,064 + Dsui_0089 0.55 +0.7
88,067 + +0.7
88,122 - Dsui_0089 0.59 +0.4
88,145 - Dsui_0089 0.60 -0.0
88,145 - Dsui_0089 0.60 +0.3
88,145 - Dsui_0089 0.60 -0.2
88,198 + Dsui_0089 0.63 +0.0
88,218 - Dsui_0089 0.64 -0.4
88,228 - Dsui_0089 0.65 +0.2
88,284 + Dsui_0089 0.69 -1.8
88,292 - Dsui_0089 0.69 +0.4
88,297 - Dsui_0089 0.69 +1.2
88,297 - Dsui_0089 0.69 +0.5
88,354 + Dsui_0089 0.73 -1.8
88,425 + Dsui_0089 0.77 -1.6
88,433 - Dsui_0089 0.78 +0.2
88,433 - Dsui_0089 0.78 -0.0
88,454 - Dsui_0089 0.79 +0.2
88,545 + Dsui_0089 0.84 -2.1
88,557 + +0.7
88,631 + Dsui_0089 0.90 -0.8
88,719 + +0.7
88,729 + +0.7
88,738 - +0.5
88,743 - +0.3
88,781 - +0.2
88,781 - +0.2
88,781 - +0.7
88,782 - +1.0
88,782 - +0.6
88,782 - -0.0
88,812 - -0.1
88,820 + -0.3
88,844 + -0.8

Or see this region's nucleotide sequence