Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03681

Experiment: PYE 25C survival rep1 12 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 25C survival rep1 12 days
3,841,763	+		CCNA_03680	0.73	-3.0
3,841,792	+		CCNA_03680	0.73	-3.6
3,841,800	-		CCNA_03680	0.74	-3.3
3,841,800	-		CCNA_03680	0.74	-2.1
3,841,803	+		CCNA_03680	0.74	-2.4
3,841,806	-		CCNA_03680	0.74	-5.2
3,841,808	+		CCNA_03680	0.74	-2.0
3,841,818	-		CCNA_03680	0.74	-2.4
3,841,837	+		CCNA_03680	0.75	-1.7
3,841,845	-		CCNA_03680	0.75	-2.9
3,841,865	+		CCNA_03680	0.75	-0.8
3,841,898	+		CCNA_03680	0.76	-0.5
3,841,913	+		CCNA_03680	0.77	-1.5
3,841,913	+		CCNA_03680	0.77	+1.3
3,841,913	+		CCNA_03680	0.77	-0.3
3,841,921	-		CCNA_03680	0.77	-1.3
3,841,921	-		CCNA_03680	0.77	-0.7
3,841,921	-		CCNA_03680	0.77	+0.2
3,841,926	-		CCNA_03680	0.77	-1.8
3,841,939	-		CCNA_03680	0.77	-1.5
3,841,941	+		CCNA_03680	0.77	-2.1
3,841,958	-		CCNA_03680	0.78	+2.3
3,841,966	+		CCNA_03680	0.78	-1.4
3,841,974	+		CCNA_03680	0.78	-1.3
3,841,974	+		CCNA_03680	0.78	-3.0
3,841,982	-		CCNA_03680	0.79	-2.7
3,841,982	-		CCNA_03680	0.79	-3.6
3,841,982	-		CCNA_03680	0.79	-3.0
3,842,016	-		CCNA_03680	0.80	-1.9
3,842,024	+		CCNA_03680	0.80	-1.4
3,842,029	+		CCNA_03680	0.80	-2.5
3,842,034	-		CCNA_03680	0.80	-3.8
3,842,056	+		CCNA_03680	0.81	-1.5
3,842,056	+		CCNA_03680	0.81	-3.0
3,842,056	+		CCNA_03680	0.81	-1.0
3,842,063	+		CCNA_03680	0.81	-1.3
3,842,063	-		CCNA_03680	0.81	-2.7
3,842,069	-		CCNA_03680	0.81	-2.6
3,842,076	-		CCNA_03680	0.81	-2.3
3,842,081	+		CCNA_03680	0.81	-1.7
3,842,089	-		CCNA_03680	0.82	-2.7
3,842,089	-		CCNA_03680	0.82	-2.2
3,842,100	+		CCNA_03680	0.82	-2.9
3,842,100	+		CCNA_03680	0.82	+0.5
3,842,108	-		CCNA_03680	0.82	-2.5
3,842,114	+		CCNA_03680	0.82	-1.2
3,842,149	-		CCNA_03680	0.83	-2.2
3,842,161	+		CCNA_03680	0.84	-0.9
3,842,188	-		CCNA_03680	0.84	-2.2
3,842,216	-		CCNA_03680	0.85	-3.9
3,842,222	-		CCNA_03680	0.85	-2.6
3,842,226	-		CCNA_03680	0.85	-1.2
3,842,226	-		CCNA_03680	0.85	-2.5
3,842,250	+		CCNA_03680	0.86	-2.3
3,842,262	-		CCNA_03680	0.86	-2.1
3,842,264	+		CCNA_03680	0.86	-1.9
3,842,270	-		CCNA_03680	0.87	-2.7
3,842,277	-		CCNA_03680	0.87	-2.0
3,842,303	-		CCNA_03680	0.88	-2.9
3,842,328	+		CCNA_03680	0.88	-0.9
3,842,334	+		CCNA_03680	0.88	-2.3
3,842,448	-				-2.7
3,842,474	+				-1.4
3,842,487	+				-0.7
3,842,566	+				-1.9
3,842,572	-				-2.1
3,842,574	-				-3.5
3,842,574	-				-3.2
3,842,575	+				-1.3
3,842,583	-				-2.2
3,842,583	-				-3.2
3,842,593	-				-2.5
3,842,687	+				-0.8
3,842,687	+				+0.3
3,842,695	-				-2.5
3,842,695	-				-3.6
3,842,729	-				-3.1
3,842,758	-				+0.2
3,842,822	+				-2.1
3,842,846	+				-2.5
3,842,846	+				-2.4
3,842,864	-		CCNA_03681	0.12	-1.1
3,842,956	+		CCNA_03681	0.22	-3.2
3,842,993	+		CCNA_03681	0.26	-2.7
3,843,011	+		CCNA_03681	0.28	-1.4
3,843,055	+		CCNA_03681	0.33	-2.3
3,843,063	-		CCNA_03681	0.34	-3.1
3,843,063	-		CCNA_03681	0.34	-3.7
3,843,063	-		CCNA_03681	0.34	-3.1
3,843,073	-		CCNA_03681	0.35	-3.2
3,843,081	+		CCNA_03681	0.36	-2.4
3,843,094	+		CCNA_03681	0.38	-2.2
3,843,135	+		CCNA_03681	0.42	-1.6
3,843,137	+		CCNA_03681	0.42	-3.1
3,843,145	+		CCNA_03681	0.43	-2.7
3,843,145	+		CCNA_03681	0.43	-2.6
3,843,153	-		CCNA_03681	0.44	-3.3
3,843,153	-		CCNA_03681	0.44	-4.7
3,843,205	+		CCNA_03681	0.50	-1.3
3,843,213	-		CCNA_03681	0.51	-1.5
3,843,232	-		CCNA_03681	0.53	-3.1
3,843,237	-		CCNA_03681	0.54	-0.9
3,843,273	+		CCNA_03681	0.58	-3.6
3,843,273	+		CCNA_03681	0.58	-0.3
3,843,273	+		CCNA_03681	0.58	-4.0
3,843,281	-		CCNA_03681	0.59	-4.1
3,843,281	-		CCNA_03681	0.59	-2.2
3,843,296	-		CCNA_03681	0.60	-2.5
3,843,306	+		CCNA_03681	0.61	-2.5
3,843,339	+		CCNA_03681	0.65	-2.1
3,843,347	-		CCNA_03681	0.66	-4.1
3,843,351	+		CCNA_03681	0.67	-4.9
3,843,352	-		CCNA_03681	0.67	-3.6
3,843,352	-		CCNA_03681	0.67	-2.9
3,843,367	-		CCNA_03681	0.68	-2.3
3,843,375	+		CCNA_03681	0.69	-2.9
3,843,396	+		CCNA_03681	0.72	-2.8
3,843,419	-		CCNA_03681	0.74	-1.4
3,843,423	+		CCNA_03681	0.75	-1.4
3,843,423	+		CCNA_03681	0.75	-0.9
3,843,433	+		CCNA_03681	0.76	-3.2
3,843,435	+		CCNA_03681	0.76	-1.5
3,843,436	+		CCNA_03681	0.76	-2.1
3,843,441	-		CCNA_03681	0.77	-1.7
3,843,443	-		CCNA_03681	0.77	-2.6
3,843,454	+		CCNA_03681	0.78	-1.1
3,843,454	+		CCNA_03681	0.78	-4.0
3,843,462	-		CCNA_03681	0.79	-4.2
3,843,462	-		CCNA_03681	0.79	-2.7
3,843,462	-				+2.3
3,843,463	-		CCNA_03681	0.79	-3.8
3,843,523	-		CCNA_03681	0.86	-1.7
3,843,523	-		CCNA_03681	0.86	-3.8
3,843,579	+				+1.3
3,843,579	+				-1.6
3,843,587	-				-3.0
3,843,587	-				-2.1
3,843,589	+				-2.7
3,843,589	+				-1.8
3,843,619	-				-3.6
3,843,620	-				-3.6
3,843,638	+				-3.1
3,843,646	-				-1.2
3,843,687	+				-1.2
3,843,692	+				-1.9
3,843,695	-				-1.4
3,843,695	-				-1.9
3,843,700	-				-1.7
3,843,713	-				-0.0
3,843,772	+				-1.1
3,843,772	+				-0.4
3,843,772	+				-0.0
3,843,772	+				+0.4
3,843,783	+				-3.5
3,843,783	+				-0.5
3,843,785	+				-0.7
3,843,785	+				+0.1
3,843,793	-				-1.5
3,843,834	+				-0.3
3,843,842	-				-0.1
3,843,926	+				-0.1
3,843,926	+				+0.9
3,843,933	+				+0.8
3,843,941	-				-0.3
3,843,941	-				-0.3
3,843,942	-				-0.7
3,843,955	-				+0.1
3,843,957	+				-1.5
3,844,000	+				-1.7
3,844,015	+				-0.3
3,844,033	+		CCNA_03682	0.12	-1.5
3,844,034	-		CCNA_03682	0.12	-0.3
3,844,048	+		CCNA_03682	0.14	+0.2
3,844,056	-		CCNA_03682	0.16	+0.5
3,844,061	-		CCNA_03682	0.16	+0.2
3,844,160	+		CCNA_03682	0.31	+0.1
3,844,160	-		CCNA_03682	0.31	-1.0
3,844,185	+		CCNA_03682	0.35	+0.2
3,844,195	+		CCNA_03682	0.36	-1.7
3,844,218	+		CCNA_03682	0.39	+0.2
3,844,218	+		CCNA_03682	0.39	+0.1
3,844,226	-		CCNA_03682	0.41	-1.0
3,844,240	+		CCNA_03682	0.43	+0.7
3,844,241	+		CCNA_03682	0.43	+1.1
3,844,241	+		CCNA_03682	0.43	-1.1
3,844,241	+		CCNA_03682	0.43	-0.8
3,844,241	+		CCNA_03682	0.43	+0.1
3,844,241	+		CCNA_03682	0.43	-1.6
3,844,249	-		CCNA_03682	0.44	-0.3
3,844,249	-		CCNA_03682	0.44	-0.0
3,844,249	-		CCNA_03682	0.44	+1.3
3,844,249	-		CCNA_03682	0.44	+1.1
3,844,249	-		CCNA_03682	0.44	-2.5
3,844,312	+		CCNA_03682	0.53	+0.2
3,844,312	+		CCNA_03682	0.53	-0.1
3,844,312	+		CCNA_03682	0.53	+0.5
3,844,312	+		CCNA_03682	0.53	+0.3
3,844,312	+		CCNA_03682	0.53	-0.4
3,844,312	+		CCNA_03682	0.53	+0.0
3,844,312	+		CCNA_03682	0.53	-1.1
3,844,312	+		CCNA_03682	0.53	-0.0
3,844,312	+		CCNA_03682	0.53	-0.9
3,844,320	-		CCNA_03682	0.54	+0.9
3,844,320	-		CCNA_03682	0.54	-0.5
3,844,320	-		CCNA_03682	0.54	-1.6
3,844,320	-		CCNA_03682	0.54	-2.7
3,844,320	-		CCNA_03682	0.54	-0.6
3,844,321	-		CCNA_03682	0.54	-0.7
3,844,321	-		CCNA_03682	0.54	+1.1
3,844,324	+		CCNA_03682	0.55	+0.9
3,844,332	-		CCNA_03682	0.56	-1.5
3,844,332	-		CCNA_03682	0.56	-0.3
3,844,352	-		CCNA_03682	0.59	-2.6
3,844,358	+		CCNA_03682	0.60	+1.0
3,844,358	+		CCNA_03682	0.60	+0.0
3,844,358	+		CCNA_03682	0.60	+0.5
3,844,366	-		CCNA_03682	0.61	-0.1
3,844,366	-		CCNA_03682	0.61	+0.5
3,844,492	+		CCNA_03682	0.80	+1.7
3,844,501	+		CCNA_03682	0.81	+0.9
3,844,536	-		CCNA_03682	0.86	-1.6
3,844,543	+		CCNA_03682	0.87	+1.2
3,844,551	-		CCNA_03682	0.88	-1.6
3,844,552	-		CCNA_03682	0.88	-0.3
3,844,552	-		CCNA_03682	0.88	-1.7
3,844,552	-		CCNA_03682	0.88	+0.3
3,844,552	-		CCNA_03682	0.88	-0.8
3,844,591	+				+0.6
3,844,638	+				+1.1