Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03618

Experiment: PYE 25C survival rep1 12 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 25C survival rep1 12 days
3,771,752	+		CCNA_03616	0.64	-1.6
3,771,754	-		CCNA_03616	0.64	-0.6
3,771,778	+		CCNA_03616	0.66	-1.2
3,771,778	+		CCNA_03616	0.66	-3.0
3,771,778	+		CCNA_03616	0.66	-2.7
3,771,786	-		CCNA_03616	0.66	-2.1
3,771,788	+		CCNA_03616	0.67	+1.4
3,771,794	+		CCNA_03616	0.67	-0.6
3,771,797	-		CCNA_03616	0.67	-1.7
3,771,840	-		CCNA_03616	0.70	-1.7
3,771,846	+		CCNA_03616	0.71	-0.5
3,771,854	-		CCNA_03616	0.71	-1.3
3,771,854	-		CCNA_03616	0.71	-1.6
3,771,861	+		CCNA_03616	0.72	-0.6
3,771,869	-		CCNA_03616	0.72	-2.3
3,771,883	+		CCNA_03616	0.73	+1.3
3,771,921	-		CCNA_03616	0.76	-0.6
3,771,952	+		CCNA_03616	0.78	-1.5
3,771,954	-		CCNA_03616	0.78	-1.2
3,771,978	-		CCNA_03616	0.80	+0.2
3,771,992	+		CCNA_03616	0.81	-0.4
3,771,992	+		CCNA_03616	0.81	-0.6
3,772,000	-		CCNA_03616	0.82	+0.3
3,772,000	-		CCNA_03616	0.82	-1.4
3,772,065	+		CCNA_03616	0.86	+0.2
3,772,065	+		CCNA_03616	0.86	+0.1
3,772,065	+				+1.1
3,772,083	-		CCNA_03616	0.87	-1.1
3,772,105	+		CCNA_03616	0.89	-0.1
3,772,118	-				+0.2
3,772,134	-				-1.0
3,772,168	+				-1.4
3,772,168	+				+0.3
3,772,169	-				-0.1
3,772,178	-				-0.5
3,772,204	+				-0.7
3,772,212	-				-1.1
3,772,212	-				-0.7
3,772,218	-				-1.5
3,772,218	-				-0.2
3,772,218	-				+0.3
3,772,247	+				-2.4
3,772,247	+				-1.3
3,772,269	+				-4.1
3,772,269	+				-2.0
3,772,269	+				-5.0
3,772,269	+				-6.5
3,772,277	-				-2.1
3,772,277	-				-1.1
3,772,287	-				-0.7
3,772,299	+				-5.0
3,772,303	+				-5.4
3,772,311	-		CCNA_03617	0.11	+0.7
3,772,334	-		CCNA_03617	0.16	+0.3
3,772,343	+				+0.7
3,772,349	+		CCNA_03617	0.19	-4.8
3,772,390	-		CCNA_03617	0.28	-2.8
3,772,395	+		CCNA_03617	0.29	-3.7
3,772,395	+		CCNA_03617	0.29	-2.6
3,772,395	+		CCNA_03617	0.29	-4.6
3,772,465	+				-0.5
3,772,484	-		CCNA_03617	0.49	-2.9
3,772,528	-		CCNA_03617	0.58	-1.4
3,772,543	+		CCNA_03617	0.62	-4.1
3,772,543	+		CCNA_03617	0.62	-2.5
3,772,581	-		CCNA_03617	0.70	-3.7
3,772,611	-		CCNA_03617	0.77	-4.7
3,772,622	+		CCNA_03617	0.79	-3.8
3,772,644	+		CCNA_03617	0.84	-4.8
3,772,645	+		CCNA_03617	0.84	-2.5
3,772,654	+		CCNA_03617	0.86	-6.0
3,772,662	-		CCNA_03617	0.88	-4.6
3,772,662	-		CCNA_03617	0.88	-3.6
3,772,672	+				-0.5
3,772,711	+				-2.5
3,772,729	+				-3.1
3,772,729	+				-1.5
3,772,737	-				-1.3
3,772,737	-				-3.2
3,772,742	-				-1.5
3,772,742	-				-1.6
3,772,751	+				-1.7
3,772,769	+				-2.1
3,772,772	+				-1.4
3,772,797	+		CCNA_03618	0.14	-2.6
3,772,809	+		CCNA_03618	0.16	-1.9
3,772,815	-		CCNA_03618	0.17	-0.3
3,772,916	+		CCNA_03618	0.35	-3.2
3,772,916	+		CCNA_03618	0.35	-1.4
3,772,916	+		CCNA_03618	0.35	-1.8
3,772,931	+		CCNA_03618	0.37	-2.8
3,772,967	-		CCNA_03618	0.44	-3.9
3,772,971	+		CCNA_03618	0.44	-2.4
3,772,982	+		CCNA_03618	0.46	-1.5
3,772,989	+		CCNA_03618	0.47	-2.6
3,772,999	+		CCNA_03618	0.49	-2.7
3,772,999	+		CCNA_03618	0.49	-1.8
3,773,007	-		CCNA_03618	0.51	-1.7
3,773,007	-		CCNA_03618	0.51	-1.6
3,773,040	+		CCNA_03618	0.56	-2.1
3,773,040	+		CCNA_03618	0.56	-1.7
3,773,044	+		CCNA_03618	0.57	-1.0
3,773,045	+		CCNA_03618	0.57	-3.4
3,773,045	+		CCNA_03618	0.57	-2.2
3,773,048	-		CCNA_03618	0.58	-1.0
3,773,048	-		CCNA_03618	0.58	-0.9
3,773,068	-		CCNA_03618	0.61	+0.3
3,773,075	+		CCNA_03618	0.62	-1.9
3,773,083	-		CCNA_03618	0.64	-1.1
3,773,115	+		CCNA_03618	0.69	-1.5
3,773,129	-		CCNA_03618	0.72	-2.0
3,773,153	-		CCNA_03618	0.76	-0.1
3,773,250	+				-3.2
3,773,251	+				+0.0
3,773,286	-				-1.6
3,773,288	+				-0.4
3,773,318	-				+1.7
3,773,328	+				+1.0
3,773,446	+				-0.7
3,773,454	-				-1.3
3,773,526	+				-0.3
3,773,526	+				-0.1
3,773,526	+				-0.1
3,773,526	+				-0.5
3,773,534	-				-1.3
3,773,534	-				-0.9
3,773,534	-				+2.6
3,773,539	-				-0.2
3,773,585	+				+0.5
3,773,593	-				+2.9
3,773,604	+				+1.9
3,773,647	+				-2.1
3,773,680	+				+0.8
3,773,688	-				-1.3
3,773,688	-				-0.0
3,773,694	+				-0.9
3,773,702	+		CCNA_03619	0.10	+0.4
3,773,702	-		CCNA_03619	0.10	-1.4
3,773,707	+		CCNA_03619	0.10	+0.6
3,773,715	-		CCNA_03619	0.11	+0.3
3,773,724	+		CCNA_03619	0.11	+0.7
3,773,734	-		CCNA_03619	0.12	+0.1
3,773,831	+		CCNA_03619	0.16	-0.8
3,773,892	-		CCNA_03619	0.19	+0.8
3,773,893	-		CCNA_03619	0.19	-1.1
3,773,959	+		CCNA_03619	0.22	+0.9
3,773,967	-		CCNA_03619	0.22	+0.4
3,773,984	+		CCNA_03619	0.23	+0.5
3,773,992	-		CCNA_03619	0.24	+0.3
3,773,998	-		CCNA_03619	0.24	-0.0
3,774,007	+		CCNA_03619	0.24	+0.2
3,774,023	+		CCNA_03619	0.25	-1.1
3,774,024	+		CCNA_03619	0.25	+0.9
3,774,028	+		CCNA_03619	0.25	-0.6
3,774,036	+		CCNA_03619	0.26	-0.3
3,774,062	+		CCNA_03619	0.27	+0.3
3,774,083	+		CCNA_03619	0.28	+0.3
3,774,083	+		CCNA_03619	0.28	-1.2
3,774,083	+		CCNA_03619	0.28	+0.7
3,774,083	+		CCNA_03619	0.28	+0.5
3,774,089	+		CCNA_03619	0.28	+0.4
3,774,089	+		CCNA_03619	0.28	+0.3
3,774,091	-		CCNA_03619	0.28	+0.3
3,774,091	-		CCNA_03619	0.28	+0.6
3,774,091	-		CCNA_03619	0.28	-2.6
3,774,097	-		CCNA_03619	0.29	-0.3
3,774,099	+		CCNA_03619	0.29	+0.4
3,774,099	+		CCNA_03619	0.29	+0.7
3,774,099	+		CCNA_03619	0.29	-0.2
3,774,099	+		CCNA_03619	0.29	+0.3
3,774,099	+		CCNA_03619	0.29	+0.2
3,774,107	-		CCNA_03619	0.29	-0.7
3,774,107	-		CCNA_03619	0.29	-0.4
3,774,130	-		CCNA_03619	0.30	-0.5
3,774,152	+		CCNA_03619	0.31	+0.6
3,774,185	+		CCNA_03619	0.33	-0.6
3,774,188	-		CCNA_03619	0.33	-0.1
3,774,188	-		CCNA_03619	0.33	-2.2
3,774,193	-		CCNA_03619	0.33	-1.0
3,774,200	+		CCNA_03619	0.33	+0.6
3,774,201	+		CCNA_03619	0.34	-0.0
3,774,229	-		CCNA_03619	0.35	-0.7
3,774,239	+		CCNA_03619	0.35	+0.3
3,774,239	+		CCNA_03619	0.35	+0.4
3,774,247	-		CCNA_03619	0.36	-1.0
3,774,247	-		CCNA_03619	0.36	+0.5
3,774,247	-		CCNA_03619	0.36	-2.2
3,774,247	-		CCNA_03619	0.36	-0.5
3,774,247	-		CCNA_03619	0.36	+2.0
3,774,270	-		CCNA_03619	0.37	+0.1