Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03505

Experiment: PYE 25C survival rep1 12 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 25C survival rep1 12 days
3,662,485	-		CCNA_03504	0.49	-2.9
3,662,511	+		CCNA_03504	0.50	+0.2
3,662,542	-		CCNA_03504	0.52	-0.7
3,662,567	+		CCNA_03504	0.54	-0.4
3,662,586	-		CCNA_03504	0.55	+0.2
3,662,593	-		CCNA_03504	0.55	-0.0
3,662,593	-		CCNA_03504	0.55	-0.6
3,662,602	+		CCNA_03504	0.55	-0.5
3,662,608	-		CCNA_03504	0.56	+0.3
3,662,625	-		CCNA_03504	0.57	-0.1
3,662,644	-		CCNA_03504	0.58	+0.2
3,662,685	-		CCNA_03504	0.60	-0.9
3,662,688	+		CCNA_03504	0.60	+0.4
3,662,694	+		CCNA_03504	0.61	-1.3
3,662,694	+		CCNA_03504	0.61	-0.6
3,662,702	-		CCNA_03504	0.61	-1.4
3,662,709	+		CCNA_03504	0.61	-0.7
3,662,711	+		CCNA_03504	0.61	-1.8
3,662,711	+		CCNA_03504	0.61	-0.8
3,662,717	-		CCNA_03504	0.62	+1.2
3,662,717	-		CCNA_03504	0.62	-0.4
3,662,740	+		CCNA_03504	0.63	-0.8
3,662,740	+		CCNA_03504	0.63	+0.9
3,662,743	-		CCNA_03504	0.63	-0.3
3,662,758	-		CCNA_03504	0.64	-0.5
3,662,795	+		CCNA_03504	0.66	-0.4
3,662,797	+		CCNA_03504	0.66	+0.1
3,662,808	-		CCNA_03504	0.67	-0.4
3,662,820	+		CCNA_03504	0.67	+1.0
3,662,823	-		CCNA_03504	0.68	-0.2
3,662,863	+		CCNA_03504	0.70	+0.5
3,662,878	+		CCNA_03504	0.71	-0.1
3,662,891	-		CCNA_03504	0.71	-1.5
3,662,908	+		CCNA_03504	0.72	+0.1
3,662,908	+		CCNA_03504	0.72	-1.3
3,662,916	-		CCNA_03504	0.73	-0.7
3,662,916	-		CCNA_03504	0.73	-1.1
3,662,916	-		CCNA_03504	0.73	-0.1
3,662,916	-		CCNA_03504	0.73	-0.8
3,662,950	+		CCNA_03504	0.75	+1.4
3,662,962	+		CCNA_03504	0.75	-0.9
3,662,992	-		CCNA_03504	0.77	-1.5
3,662,998	-		CCNA_03504	0.77	+0.3
3,663,007	+		CCNA_03504	0.78	+1.7
3,663,016	-		CCNA_03504	0.78	-0.3
3,663,054	-		CCNA_03504	0.80	+0.4
3,663,057	+		CCNA_03504	0.81	+0.6
3,663,057	+		CCNA_03504	0.81	-0.6
3,663,065	+		CCNA_03504	0.81	-1.0
3,663,065	-		CCNA_03504	0.81	-0.6
3,663,065	-		CCNA_03504	0.81	-1.4
3,663,070	+		CCNA_03504	0.81	-0.9
3,663,073	-		CCNA_03504	0.81	-0.6
3,663,078	-		CCNA_03504	0.82	+0.6
3,663,078	-		CCNA_03504	0.82	-0.9
3,663,078	-		CCNA_03504	0.82	-0.6
3,663,101	-		CCNA_03504	0.83	+1.5
3,663,150	+		CCNA_03504	0.86	-3.8
3,663,156	+		CCNA_03504	0.86	-0.7
3,663,231	+				-0.2
3,663,231	+				+0.7
3,663,256	+				+0.2
3,663,278	-				+0.9
3,663,285	-				-0.2
3,663,295	-				-2.1
3,663,300	-				-0.2
3,663,300	-				-0.2
3,663,300	-				-1.4
3,663,306	-				-1.7
3,663,319	+				-0.6
3,663,324	+				-0.6
3,663,327	-				-0.0
3,663,346	+				+0.0
3,663,394	-				-1.5
3,663,397	-				-1.8
3,663,423	-				+0.3
3,663,423	-				+0.7
3,663,423	-				+0.9
3,663,425	+				-1.0
3,663,433	-				+0.0
3,663,449	+				+0.2
3,663,513	+				-3.0
3,663,513	+				-1.8
3,663,513	+				-3.2
3,663,513	+				-3.0
3,663,513	+				-0.5
3,663,521	-				-1.9
3,663,521	-				-2.6
3,663,563	-		CCNA_03505	0.17	-2.6
3,663,571	+		CCNA_03505	0.19	-3.6
3,663,608	-		CCNA_03505	0.27	-3.8
3,663,631	+		CCNA_03505	0.31	-3.2
3,663,676	-		CCNA_03505	0.41	-3.2
3,663,697	-		CCNA_03505	0.45	-3.9
3,663,702	+		CCNA_03505	0.46	+0.5
3,663,710	-		CCNA_03505	0.48	-5.0
3,663,759	+		CCNA_03505	0.58	-1.0
3,663,759	+		CCNA_03505	0.58	-2.9
3,663,759	-		CCNA_03505	0.58	-2.9
3,663,767	-		CCNA_03505	0.60	-1.9
3,663,803	+		CCNA_03505	0.67	-2.0
3,663,808	+		CCNA_03505	0.68	-2.6
3,663,811	-		CCNA_03505	0.69	-2.4
3,663,818	+		CCNA_03505	0.70	-1.1
3,663,826	-		CCNA_03505	0.72	-4.2
3,663,858	-		CCNA_03505	0.78	-2.1
3,663,866	-		CCNA_03505	0.80	-2.2
3,663,877	+		CCNA_03505	0.82	-1.0
3,663,882	+		CCNA_03505	0.83	-0.7
3,663,895	-		CCNA_03505	0.86	-3.0
3,663,895	-		CCNA_03505	0.86	-3.1
3,663,899	+		CCNA_03505	0.87	-2.2
3,663,900	-		CCNA_03505	0.87	-3.2
3,663,907	-		CCNA_03505	0.89	-4.7
3,663,966	-				+0.5
3,663,971	-				-0.7
3,663,973	-				-0.1
3,663,973	-				+0.7
3,663,996	-				-2.0
3,664,000	+				-0.5
3,664,003	+				-0.5
3,664,008	-				-0.8
3,664,011	-				-1.4
3,664,018	-				-1.3
3,664,054	-				+0.3
3,664,080	+				-5.8
3,664,081	+				-2.4
3,664,087	+				+0.4
3,664,087	+				-0.0
3,664,087	+				+0.7
3,664,095	-				-2.1
3,664,148	-				+0.9
3,664,186	+		CCNA_03506	0.16	+0.4
3,664,191	+		CCNA_03506	0.17	+0.6
3,664,194	-		CCNA_03506	0.18	+0.2
3,664,199	-		CCNA_03506	0.19	+0.0
3,664,257	+		CCNA_03506	0.28	+1.1
3,664,262	+		CCNA_03506	0.29	+1.8
3,664,272	+		CCNA_03506	0.31	-0.7
3,664,272	+		CCNA_03506	0.31	-2.7
3,664,272	+		CCNA_03506	0.31	+0.6
3,664,272	+		CCNA_03506	0.31	+0.3
3,664,293	-		CCNA_03506	0.35	-0.5
3,664,307	+		CCNA_03506	0.37	+1.3
3,664,326	-		CCNA_03506	0.40	+0.8
3,664,334	-		CCNA_03506	0.41	-1.5
3,664,377	+		CCNA_03506	0.49	-0.1
3,664,385	+		CCNA_03506	0.50	+0.6
3,664,385	-		CCNA_03506	0.50	+0.5
3,664,443	+		CCNA_03506	0.60	+0.5
3,664,450	+		CCNA_03506	0.61	-0.1
3,664,450	+		CCNA_03506	0.61	+1.1
3,664,458	-		CCNA_03506	0.63	-2.0
3,664,463	-		CCNA_03506	0.63	+0.0
3,664,463	-		CCNA_03506	0.63	+0.4
3,664,492	+		CCNA_03506	0.68	-1.3
3,664,492	+		CCNA_03506	0.68	-0.6
3,664,505	-		CCNA_03506	0.71	+0.0
3,664,532	-		CCNA_03506	0.75	-0.5
3,664,537	-		CCNA_03506	0.76	-0.2
3,664,556	-		CCNA_03506	0.79	-1.0
3,664,623	+				+0.7
3,664,689	+				+0.5
3,664,742	+				+1.9
3,664,742	+				-1.5
3,664,744	+				-0.5
3,664,744	+				+0.7
3,664,744	+				-1.3
3,664,744	+				-2.0
3,664,750	-				+0.2
3,664,752	-				+1.0
3,664,752	-				+0.0
3,664,752	-				-0.6
3,664,758	-				+0.6
3,664,780	+				-1.0
3,664,788	-				+1.7
3,664,801	+				-0.5
3,664,803	-				+0.2
3,664,836	+				-1.0
3,664,836	+				-2.0
3,664,836	+				-0.5
3,664,842	+				-1.5
3,664,843	-				-0.2
3,664,844	-				+0.9
3,664,844	-				+1.0
3,664,850	-				-0.2
3,664,850	-				+0.7
3,664,856	-				+0.8
3,664,947	-		CCNA_03507	0.12	+3.3
3,664,947	-		CCNA_03507	0.12	+1.0
3,664,960	+		CCNA_03507	0.13	+0.6