Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03412

Experiment: PYE 25C survival rep1 12 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 25C survival rep1 12 days
3,578,432	-		CCNA_03410	0.83	+0.3
3,578,518	+				+0.5
3,578,526	-				-0.4
3,578,564	+				-0.8
3,578,572	-				-0.9
3,578,572	-				-1.1
3,578,581	-				-1.0
3,578,608	+				+0.3
3,578,629	+				-0.7
3,578,637	-				+2.3
3,578,649	-				+2.8
3,578,649	-				+0.0
3,578,656	-				-0.7
3,578,894	-				-0.5
3,578,952	+		CCNA_03906	0.10	-0.2
3,578,952	+		CCNA_03906	0.10	+0.8
3,578,953	+		CCNA_03906	0.10	+0.2
3,578,960	-		CCNA_03906	0.12	-0.5
3,578,960	-		CCNA_03906	0.12	-1.4
3,578,960	-		CCNA_03906	0.12	-1.0
3,578,960	-		CCNA_03906	0.12	-1.1
3,578,960	-		CCNA_03906	0.12	+2.3
3,578,960	-		CCNA_03906	0.12	-0.2
3,578,984	-		CCNA_03906	0.19	-0.8
3,579,036	-		CCNA_03906	0.34	+1.3
3,579,042	+		CCNA_03906	0.36	+2.3
3,579,045	-		CCNA_03906	0.36	-0.4
3,579,075	-		CCNA_03906	0.45	+0.5
3,579,077	+		CCNA_03906	0.45	-0.4
3,579,077	+		CCNA_03906	0.45	-2.5
3,579,077	+		CCNA_03906	0.45	+0.0
3,579,077	+		CCNA_03906	0.45	+0.6
3,579,085	-		CCNA_03906	0.48	+0.4
3,579,102	+		CCNA_03906	0.53	-1.0
3,579,118	+		CCNA_03906	0.57	-0.2
3,579,131	+		CCNA_03906	0.61	-1.6
3,579,138	+		CCNA_03906	0.63	-0.4
3,579,139	+		CCNA_03906	0.63	+1.0
3,579,166	+		CCNA_03906	0.71	+0.3
3,579,174	-		CCNA_03906	0.73	-0.3
3,579,195	+		CCNA_03906	0.79	-2.0
3,579,200	+		CCNA_03906	0.80	+0.6
3,579,200	+		CCNA_03906	0.80	-0.1
3,579,200	+		CCNA_03906	0.80	-0.9
3,579,200	+		CCNA_03906	0.80	+0.3
3,579,208	-		CCNA_03906	0.82	+0.8
3,579,208	-				+2.3
3,579,208	-		CCNA_03906	0.82	+0.1
3,579,208	-		CCNA_03906	0.82	+0.2
3,579,208	-		CCNA_03906	0.82	-0.2
3,579,208	-		CCNA_03906	0.82	-0.7
3,579,208	-		CCNA_03906	0.82	-0.1
3,579,208	-		CCNA_03906	0.82	-0.3
3,579,208	-		CCNA_03906	0.82	+1.9
3,579,208	-		CCNA_03906	0.82	-0.2
3,579,215	-		CCNA_03906	0.84	+2.2
3,579,219	+		CCNA_03906	0.86	-1.0
3,579,219	+		CCNA_03906	0.86	+1.0
3,579,219	+		CCNA_03906	0.86	-0.3
3,579,219	+		CCNA_03906	0.86	+0.2
3,579,224	+		CCNA_03906	0.87	-0.1
3,579,227	-		CCNA_03906	0.88	+0.0
3,579,227	-		CCNA_03906	0.88	+1.2
3,579,232	-		CCNA_03906	0.89	+0.0
3,579,257	-				-0.1
3,579,257	-				-1.8
3,579,290	+				-1.9
3,579,290	+				-0.2
3,579,290	-				-0.4
3,579,298	-				+0.3
3,579,298	-				-0.2
3,579,302	+				+0.1
3,579,314	+				-0.8
3,579,314	+				+0.4
3,579,314	+				+0.2
3,579,314	+				-0.4
3,579,322	-				-0.2
3,579,322	-				-0.6
3,579,322	-				+0.1
3,579,349	+				+0.0
3,579,366	-				-0.3
3,579,373	+				-0.1
3,579,430	+				-1.0
3,579,438	-				-3.7
3,579,463	-				-3.3
3,579,463	-				-3.9
3,579,504	+				-2.6
3,579,504	+				-1.8
3,579,504	+				-2.2
3,579,504	+				-2.4
3,579,512	-				-3.0
3,579,512	-				-2.6
3,579,514	+				-1.1
3,579,526	+				-0.5
3,579,528	+				-3.9
3,579,528	+				-5.7
3,579,538	+				-3.7
3,579,538	+				+0.5
3,579,538	+				-2.6
3,579,546	-				-3.4
3,579,546	-				-3.7
3,579,546	-				-2.8
3,579,555	-		CCNA_03412	0.11	-3.1
3,579,570	+		CCNA_03412	0.12	-1.5
3,579,590	+		CCNA_03412	0.13	-3.2
3,579,603	-		CCNA_03412	0.14	-3.6
3,579,628	-		CCNA_03412	0.16	-2.8
3,579,664	+		CCNA_03412	0.18	-3.1
3,579,672	-		CCNA_03412	0.19	-3.6
3,579,672	-		CCNA_03412	0.19	-3.8
3,579,707	-		CCNA_03412	0.21	-3.9
3,579,717	-		CCNA_03412	0.22	-4.1
3,579,733	-		CCNA_03412	0.23	-2.9
3,579,792	-		CCNA_03412	0.27	-1.4
3,579,818	+		CCNA_03412	0.29	-2.7
3,579,827	+		CCNA_03412	0.30	-2.3
3,579,834	+		CCNA_03412	0.30	-1.1
3,579,834	+		CCNA_03412	0.30	-2.1
3,579,842	-		CCNA_03412	0.31	-3.1
3,579,842	-		CCNA_03412	0.31	-4.2
3,579,870	-		CCNA_03412	0.33	-3.7
3,579,870	-		CCNA_03412	0.33	-4.4
3,579,877	-		CCNA_03412	0.33	-2.2
3,579,877	-		CCNA_03412	0.33	-1.4
3,579,877	-		CCNA_03412	0.33	-2.4
3,579,931	+		CCNA_03412	0.37	-0.2
3,579,931	+		CCNA_03412	0.37	-1.2
3,579,938	-		CCNA_03412	0.38	-3.9
3,579,939	-		CCNA_03412	0.38	-1.5
3,579,961	+		CCNA_03412	0.39	-0.7
3,579,968	-		CCNA_03412	0.40	-1.9
3,580,008	+		CCNA_03412	0.42	+0.8
3,580,008	+		CCNA_03412	0.42	+1.3
3,580,015	+				+0.8
3,580,016	-		CCNA_03412	0.43	-2.3
3,580,016	-		CCNA_03412	0.43	-2.8
3,580,016	-		CCNA_03412	0.43	-2.9
3,580,023	-		CCNA_03412	0.44	-3.4
3,580,023	-		CCNA_03412	0.44	-3.3
3,580,027	+		CCNA_03412	0.44	-0.8
3,580,027	+		CCNA_03412	0.44	-1.4
3,580,027	+		CCNA_03412	0.44	-1.2
3,580,035	-		CCNA_03412	0.44	-1.5
3,580,040	-		CCNA_03412	0.45	-0.5
3,580,102	-		CCNA_03412	0.49	-3.1
3,580,109	-		CCNA_03412	0.50	-4.1
3,580,109	-		CCNA_03412	0.50	-2.1
3,580,155	+		CCNA_03412	0.53	-1.1
3,580,163	-		CCNA_03412	0.53	-2.5
3,580,182	+		CCNA_03412	0.55	-1.5
3,580,195	-		CCNA_03412	0.56	-0.5
3,580,211	+		CCNA_03412	0.57	-0.7
3,580,239	-		CCNA_03412	0.59	-2.9
3,580,305	+		CCNA_03412	0.63	-0.2
3,580,339	+		CCNA_03412	0.66	+0.3
3,580,411	+		CCNA_03412	0.71	-1.9
3,580,430	+		CCNA_03412	0.72	-0.5
3,580,438	-		CCNA_03412	0.73	-4.1
3,580,450	-		CCNA_03412	0.74	-2.5
3,580,467	+		CCNA_03412	0.75	-2.1
3,580,475	-		CCNA_03412	0.75	-2.8
3,580,480	+		CCNA_03412	0.76	-3.0
3,580,524	-		CCNA_03412	0.79	-3.7
3,580,527	-		CCNA_03412	0.79	-1.9
3,580,558	+		CCNA_03412	0.81	-3.4
3,580,625	+		CCNA_03412	0.86	-0.2
3,580,626	+		CCNA_03412	0.86	+0.0
3,580,626	+		CCNA_03412	0.86	-4.1
3,580,631	+		CCNA_03412	0.86	-1.5
3,580,633	-		CCNA_03412	0.87	-2.9
3,580,645	-		CCNA_03412	0.87	-3.7
3,580,645	-		CCNA_03412	0.87	-3.2
3,580,682	-				-2.8
3,580,727	-				-2.9
3,580,744	+				-1.2
3,580,749	+				-0.2
3,580,792	+				+0.0
3,580,792	+				+1.3
3,580,794	+				+0.0
3,580,794	+				-1.3
3,580,794	+				+0.0
3,580,794	+				+0.3
3,580,802	-				-2.1
3,580,802	-				-3.7
3,580,802	-				-2.9
3,580,802	-				-2.0
3,580,802	-				-4.1
3,580,802	-				-2.2
3,580,802	-				-5.3
3,580,833	-				-0.5
3,580,840	+				+0.5
3,580,840	+				-0.8
3,580,840	+				-1.8
3,580,840	+				-1.2
3,580,840	+				-1.8
3,580,848	-				-0.5
3,580,863	-				-3.9
3,580,941	-		CCNA_03413	0.26	-2.1
3,580,963	-		CCNA_03413	0.33	-2.7
3,580,963	-		CCNA_03413	0.33	-3.8
3,580,970	-		CCNA_03413	0.35	-2.3
3,580,975	+		CCNA_03413	0.37	-0.2
3,580,993	+		CCNA_03413	0.42	-0.7
3,580,998	+		CCNA_03413	0.43	+1.3
3,580,998	+		CCNA_03413	0.43	+2.3
3,580,998	+				+2.3
3,580,998	+		CCNA_03413	0.43	+0.3
3,580,998	+		CCNA_03413	0.43	+0.0
3,580,998	+		CCNA_03413	0.43	-0.2
3,580,998	+		CCNA_03413	0.43	+0.0
3,581,001	-		CCNA_03413	0.44	-2.7
3,581,006	-		CCNA_03413	0.46	-3.1
3,581,006	-		CCNA_03413	0.46	-3.4
3,581,016	+		CCNA_03413	0.49	-1.5
3,581,063	+		CCNA_03413	0.63	+0.0
3,581,068	+		CCNA_03413	0.64	+1.3
3,581,076	-		CCNA_03413	0.67	-3.7
3,581,077	+		CCNA_03413	0.67	-0.2
3,581,115	-		CCNA_03413	0.78	-3.4
3,581,161	+				-0.7
3,581,164	-				-0.8
3,581,220	+				+0.3
3,581,228	-				-0.0
3,581,228	-				-0.8
3,581,231	+				-1.7
3,581,260	-				-2.8
3,581,263	-				-0.7
3,581,345	-		CCNA_03414	0.12	-3.5
3,581,403	+		CCNA_03414	0.17	-4.5
3,581,434	-		CCNA_03414	0.19	-3.5
3,581,444	+		CCNA_03414	0.20	-2.1
3,581,444	-		CCNA_03414	0.20	-4.2
3,581,500	+		CCNA_03414	0.25	+0.2
3,581,522	-		CCNA_03414	0.27	-1.7
3,581,529	+		CCNA_03414	0.28	-2.4
3,581,529	+		CCNA_03414	0.28	+0.8
3,581,537	-		CCNA_03414	0.28	-1.7
3,581,537	-		CCNA_03414	0.28	-3.5
3,581,547	-		CCNA_03414	0.29	-2.1
3,581,566	+		CCNA_03414	0.31	+1.2
3,581,569	-		CCNA_03414	0.31	-2.4
3,581,604	+		CCNA_03414	0.34	-1.6
3,581,640	-		CCNA_03414	0.37	-2.7
3,581,687	-		CCNA_03414	0.41	-3.3
3,581,730	+		CCNA_03414	0.45	-1.8
3,581,732	-		CCNA_03414	0.45	+1.3
3,581,738	-		CCNA_03414	0.46	-2.0
3,581,770	+		CCNA_03414	0.49	-0.7
3,581,796	+		CCNA_03414	0.51	-0.2
3,581,802	+		CCNA_03414	0.52	-2.1
3,581,810	-		CCNA_03414	0.52	-0.7