Experiment: PYE 25C survival rep1 12 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03358 and CCNA_03359 are separated by 178 nucleotides CCNA_03359 and CCNA_03360 are separated by 166 nucleotides
CCNA_03358: CCNA_03358 - glyceraldehyde 3-phosphate dehydrogenase, at 3,536,116 to 3,537,123
_03358
CCNA_03359: CCNA_03359 - phosphoglycerate kinase, at 3,537,302 to 3,538,492
_03359
CCNA_03360: CCNA_03360 - tagatose-1,6-bisphosphate aldolase, at 3,538,659 to 3,539,750
_03360
Position (kb)
3537
3538
3539 Strain fitness (log2 ratio)
-2
-1
0
1 at 3537.117 kb on + strand at 3537.120 kb on + strand at 3537.130 kb on + strand at 3537.130 kb on + strand at 3537.138 kb on - strand at 3537.138 kb on - strand at 3537.209 kb on + strand at 3537.209 kb on + strand at 3537.209 kb on + strand at 3537.209 kb on + strand at 3537.211 kb on - strand at 3537.213 kb on - strand at 3537.215 kb on + strand at 3537.217 kb on - strand at 3537.217 kb on - strand at 3537.217 kb on - strand at 3537.223 kb on - strand at 3537.223 kb on - strand at 3537.228 kb on - strand at 3537.233 kb on + strand at 3537.235 kb on + strand at 3537.241 kb on + strand at 3537.257 kb on + strand at 3538.446 kb on + strand at 3538.500 kb on - strand at 3538.514 kb on + strand at 3538.514 kb on + strand at 3538.522 kb on - strand at 3538.547 kb on + strand at 3538.562 kb on + strand at 3538.576 kb on + strand at 3538.586 kb on - strand at 3538.601 kb on - strand at 3538.601 kb on - strand at 3538.624 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 25C survival rep1 12 days remove 3,537,117 + -0.0 3,537,120 + +0.4 3,537,130 + +0.2 3,537,130 + +0.3 3,537,138 - -0.3 3,537,138 - -0.2 3,537,209 + +0.1 3,537,209 + +1.0 3,537,209 + +0.2 3,537,209 + +1.0 3,537,211 - -0.0 3,537,213 - -0.8 3,537,215 + +0.3 3,537,217 - -0.9 3,537,217 - +1.3 3,537,217 - -1.4 3,537,223 - -0.2 3,537,223 - -0.5 3,537,228 - +0.9 3,537,233 + +0.7 3,537,235 + -0.2 3,537,241 + -0.2 3,537,257 + -0.3 3,538,446 + -0.2 3,538,500 - +0.3 3,538,514 + +1.2 3,538,514 + +0.3 3,538,522 - -0.1 3,538,547 + +0.5 3,538,562 + -0.1 3,538,576 + +0.9 3,538,586 - -0.0 3,538,601 - +0.0 3,538,601 - -1.8 3,538,624 + +0.7
Or see this region's nucleotide sequence