Experiment: PYE 25C survival rep1 12 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00726 and CCNA_00727 are separated by 156 nucleotides CCNA_00727 and CCNA_00728 are separated by 72 nucleotides CCNA_00728 and CCNA_00729 are separated by 94 nucleotides
CCNA_00726: CCNA_00726 - acyl-CoA dehydrogenase, at 781,663 to 782,970
_00726
CCNA_00727: CCNA_00727 - ribosomal-protein-alanine acetyltransferase, at 783,127 to 783,723
_00727
CCNA_00728: CCNA_00728 - hypothetical protein, at 783,796 to 784,959
_00728
CCNA_00729: CCNA_00729 - hypothetical protein, at 785,054 to 786,358
_00729
Position (kb) 783
784
785 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 782.838 kb on - strand, within CCNA_00726 at 782.881 kb on - strand at 782.926 kb on - strand at 782.927 kb on - strand at 782.929 kb on + strand at 782.954 kb on - strand at 782.959 kb on + strand at 782.965 kb on + strand at 782.965 kb on + strand at 782.965 kb on + strand at 782.965 kb on + strand at 782.965 kb on + strand at 782.973 kb on - strand at 782.973 kb on - strand at 782.973 kb on - strand at 782.973 kb on - strand at 783.028 kb on - strand at 783.038 kb on - strand at 783.067 kb on + strand at 783.067 kb on + strand at 783.075 kb on - strand at 783.075 kb on - strand at 783.075 kb on - strand at 783.075 kb on - strand at 783.075 kb on - strand at 783.075 kb on - strand at 783.080 kb on - strand at 783.084 kb on + strand at 783.092 kb on - strand at 783.092 kb on - strand at 783.128 kb on + strand at 783.130 kb on - strand at 783.154 kb on - strand at 783.214 kb on + strand, within CCNA_00727 at 783.236 kb on + strand, within CCNA_00727 at 783.272 kb on + strand, within CCNA_00727 at 783.282 kb on + strand, within CCNA_00727 at 783.290 kb on - strand, within CCNA_00727 at 783.295 kb on + strand, within CCNA_00727 at 783.300 kb on + strand, within CCNA_00727 at 783.300 kb on + strand, within CCNA_00727 at 783.303 kb on - strand, within CCNA_00727 at 783.387 kb on - strand, within CCNA_00727 at 783.387 kb on - strand, within CCNA_00727 at 783.429 kb on + strand, within CCNA_00727 at 783.432 kb on - strand, within CCNA_00727 at 783.442 kb on - strand, within CCNA_00727 at 783.446 kb on + strand, within CCNA_00727 at 783.451 kb on + strand, within CCNA_00727 at 783.455 kb on - strand, within CCNA_00727 at 783.459 kb on - strand, within CCNA_00727 at 783.462 kb on + strand, within CCNA_00727 at 783.464 kb on - strand, within CCNA_00727 at 783.504 kb on + strand, within CCNA_00727 at 783.504 kb on + strand, within CCNA_00727 at 783.504 kb on + strand, within CCNA_00727 at 783.523 kb on + strand, within CCNA_00727 at 783.523 kb on + strand, within CCNA_00727 at 783.528 kb on + strand, within CCNA_00727 at 783.528 kb on + strand, within CCNA_00727 at 783.605 kb on + strand, within CCNA_00727 at 783.605 kb on + strand, within CCNA_00727 at 783.639 kb on - strand, within CCNA_00727 at 783.656 kb on - strand, within CCNA_00727 at 783.705 kb on + strand at 783.736 kb on - strand at 783.737 kb on - strand at 783.775 kb on + strand at 783.783 kb on - strand at 783.783 kb on - strand at 783.802 kb on + strand at 783.826 kb on + strand at 783.845 kb on + strand at 783.924 kb on + strand, within CCNA_00728 at 783.953 kb on + strand, within CCNA_00728 at 783.953 kb on + strand, within CCNA_00728 at 783.984 kb on - strand, within CCNA_00728 at 784.035 kb on + strand, within CCNA_00728 at 784.043 kb on - strand, within CCNA_00728 at 784.060 kb on - strand, within CCNA_00728 at 784.062 kb on + strand, within CCNA_00728 at 784.070 kb on - strand, within CCNA_00728 at 784.085 kb on + strand, within CCNA_00728 at 784.085 kb on + strand, within CCNA_00728 at 784.096 kb on + strand, within CCNA_00728 at 784.096 kb on + strand, within CCNA_00728 at 784.104 kb on + strand, within CCNA_00728 at 784.251 kb on + strand, within CCNA_00728 at 784.251 kb on + strand, within CCNA_00728 at 784.257 kb on + strand, within CCNA_00728 at 784.257 kb on + strand, within CCNA_00728 at 784.290 kb on - strand, within CCNA_00728 at 784.302 kb on - strand, within CCNA_00728 at 784.303 kb on - strand, within CCNA_00728 at 784.309 kb on + strand, within CCNA_00728 at 784.310 kb on + strand, within CCNA_00728 at 784.325 kb on - strand, within CCNA_00728 at 784.332 kb on + strand, within CCNA_00728 at 784.333 kb on + strand, within CCNA_00728 at 784.340 kb on - strand, within CCNA_00728 at 784.345 kb on + strand, within CCNA_00728 at 784.349 kb on + strand, within CCNA_00728 at 784.366 kb on - strand, within CCNA_00728 at 784.405 kb on + strand, within CCNA_00728 at 784.413 kb on - strand, within CCNA_00728 at 784.413 kb on - strand, within CCNA_00728 at 784.426 kb on + strand, within CCNA_00728 at 784.434 kb on - strand, within CCNA_00728 at 784.465 kb on - strand, within CCNA_00728 at 784.483 kb on - strand, within CCNA_00728 at 784.532 kb on + strand, within CCNA_00728 at 784.551 kb on + strand, within CCNA_00728 at 784.559 kb on - strand, within CCNA_00728 at 784.559 kb on - strand, within CCNA_00728 at 784.563 kb on + strand, within CCNA_00728 at 784.563 kb on + strand, within CCNA_00728 at 784.563 kb on + strand, within CCNA_00728 at 784.571 kb on - strand, within CCNA_00728 at 784.571 kb on - strand, within CCNA_00728 at 784.610 kb on + strand, within CCNA_00728 at 784.616 kb on + strand, within CCNA_00728 at 784.620 kb on + strand, within CCNA_00728 at 784.621 kb on + strand, within CCNA_00728 at 784.634 kb on - strand, within CCNA_00728 at 784.649 kb on - strand, within CCNA_00728 at 784.650 kb on + strand, within CCNA_00728 at 784.674 kb on - strand, within CCNA_00728 at 784.675 kb on + strand, within CCNA_00728 at 784.684 kb on + strand, within CCNA_00728 at 784.693 kb on + strand, within CCNA_00728 at 784.702 kb on - strand, within CCNA_00728 at 784.706 kb on - strand, within CCNA_00728 at 784.720 kb on - strand, within CCNA_00728 at 784.722 kb on + strand, within CCNA_00728 at 784.730 kb on - strand, within CCNA_00728 at 784.787 kb on - strand, within CCNA_00728 at 784.803 kb on + strand, within CCNA_00728 at 784.810 kb on + strand, within CCNA_00728 at 784.880 kb on - strand at 784.890 kb on - strand at 784.907 kb on - strand at 784.963 kb on - strand at 784.985 kb on + strand at 785.060 kb on + strand at 785.060 kb on - strand at 785.068 kb on - strand at 785.072 kb on - strand at 785.131 kb on + strand at 785.131 kb on + strand at 785.132 kb on + strand at 785.132 kb on + strand at 785.132 kb on + strand at 785.139 kb on - strand at 785.140 kb on - strand at 785.140 kb on - strand at 785.140 kb on - strand at 785.140 kb on - strand at 785.140 kb on - strand at 785.140 kb on - strand at 785.183 kb on - strand at 785.208 kb on + strand, within CCNA_00729 at 785.208 kb on + strand, within CCNA_00729 at 785.254 kb on + strand, within CCNA_00729 at 785.263 kb on - strand, within CCNA_00729 at 785.263 kb on - strand, within CCNA_00729 at 785.263 kb on - strand, within CCNA_00729 at 785.263 kb on - strand, within CCNA_00729 at 785.318 kb on + strand, within CCNA_00729 at 785.379 kb on - strand, within CCNA_00729 at 785.381 kb on + strand, within CCNA_00729 at 785.389 kb on - strand, within CCNA_00729 at 785.389 kb on - strand, within CCNA_00729 at 785.394 kb on - strand, within CCNA_00729 at 785.416 kb on - strand, within CCNA_00729 at 785.416 kb on - strand, within CCNA_00729 at 785.443 kb on - strand, within CCNA_00729 at 785.499 kb on - strand, within CCNA_00729 at 785.499 kb on - strand, within CCNA_00729 at 785.517 kb on - strand, within CCNA_00729 at 785.602 kb on + strand, within CCNA_00729 at 785.648 kb on - strand, within CCNA_00729 at 785.691 kb on + strand, within CCNA_00729 at 785.699 kb on - strand, within CCNA_00729 at 785.701 kb on + strand, within CCNA_00729 at 785.701 kb on + strand, within CCNA_00729 at 785.709 kb on - strand, within CCNA_00729 at 785.734 kb on - strand, within CCNA_00729 at 785.739 kb on + strand, within CCNA_00729 at 785.772 kb on + strand, within CCNA_00729 at 785.782 kb on + strand, within CCNA_00729 at 785.782 kb on + strand, within CCNA_00729 at 785.790 kb on - strand, within CCNA_00729 at 785.790 kb on - strand, within CCNA_00729 at 785.801 kb on + strand, within CCNA_00729 at 785.812 kb on + strand, within CCNA_00729 at 785.812 kb on + strand, within CCNA_00729 at 785.812 kb on + strand, within CCNA_00729 at 785.820 kb on - strand, within CCNA_00729 at 785.820 kb on - strand, within CCNA_00729 at 785.822 kb on + strand, within CCNA_00729 at 785.822 kb on + strand, within CCNA_00729 at 785.848 kb on + strand, within CCNA_00729 at 785.878 kb on + strand, within CCNA_00729 at 785.945 kb on + strand, within CCNA_00729
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 25C survival rep1 12 days remove 782,838 - CCNA_00726 0.90 -4.3 782,881 - -4.0 782,926 - -4.1 782,927 - -2.8 782,929 + -0.6 782,954 - -1.6 782,959 + +1.4 782,965 + -1.6 782,965 + -1.0 782,965 + -0.5 782,965 + +0.8 782,965 + +0.4 782,973 - -2.6 782,973 - -0.2 782,973 - -0.6 782,973 - -1.8 783,028 - +0.9 783,038 - +0.8 783,067 + +1.1 783,067 + +2.0 783,075 - -1.9 783,075 - -2.3 783,075 - -2.4 783,075 - -1.1 783,075 - +1.6 783,075 - -0.2 783,080 - +0.8 783,084 + -1.4 783,092 - -0.7 783,092 - +1.1 783,128 + -0.6 783,130 - -0.2 783,154 - -2.5 783,214 + CCNA_00727 0.15 -2.6 783,236 + CCNA_00727 0.18 -2.7 783,272 + CCNA_00727 0.24 -3.6 783,282 + CCNA_00727 0.26 -0.9 783,290 - CCNA_00727 0.27 -1.2 783,295 + CCNA_00727 0.28 -3.1 783,300 + CCNA_00727 0.29 -0.3 783,300 + CCNA_00727 0.29 -2.2 783,303 - CCNA_00727 0.29 -2.5 783,387 - CCNA_00727 0.44 +1.4 783,387 - CCNA_00727 0.44 -1.5 783,429 + CCNA_00727 0.51 -1.0 783,432 - CCNA_00727 0.51 -3.5 783,442 - CCNA_00727 0.53 -1.2 783,446 + CCNA_00727 0.53 -1.9 783,451 + CCNA_00727 0.54 -2.4 783,455 - CCNA_00727 0.55 -2.0 783,459 - CCNA_00727 0.56 -2.2 783,462 + CCNA_00727 0.56 -2.2 783,464 - CCNA_00727 0.56 -3.0 783,504 + CCNA_00727 0.63 -1.8 783,504 + CCNA_00727 0.63 -1.7 783,504 + CCNA_00727 0.63 -0.9 783,523 + CCNA_00727 0.66 -3.0 783,523 + CCNA_00727 0.66 -1.9 783,528 + CCNA_00727 0.67 -1.3 783,528 + CCNA_00727 0.67 -3.0 783,605 + CCNA_00727 0.80 -1.6 783,605 + CCNA_00727 0.80 -1.3 783,639 - CCNA_00727 0.86 -1.2 783,656 - CCNA_00727 0.89 +0.1 783,705 + -2.9 783,736 - +1.1 783,737 - -0.6 783,775 + +0.6 783,783 - -0.4 783,783 - -1.4 783,802 + -1.7 783,826 + +0.2 783,845 + +0.0 783,924 + CCNA_00728 0.11 +0.1 783,953 + CCNA_00728 0.13 +0.0 783,953 + CCNA_00728 0.13 -0.9 783,984 - CCNA_00728 0.16 +0.1 784,035 + CCNA_00728 0.21 +0.6 784,043 - CCNA_00728 0.21 -3.0 784,060 - CCNA_00728 0.23 +0.7 784,062 + CCNA_00728 0.23 +0.4 784,070 - CCNA_00728 0.24 -0.7 784,085 + CCNA_00728 0.25 +0.4 784,085 + CCNA_00728 0.25 -0.2 784,096 + CCNA_00728 0.26 +0.2 784,096 + CCNA_00728 0.26 -0.9 784,104 + CCNA_00728 0.26 -0.3 784,251 + CCNA_00728 0.39 +1.4 784,251 + CCNA_00728 0.39 -1.2 784,257 + CCNA_00728 0.40 +0.1 784,257 + CCNA_00728 0.40 -1.3 784,290 - CCNA_00728 0.42 +1.9 784,302 - CCNA_00728 0.43 +0.8 784,303 - CCNA_00728 0.44 -0.4 784,309 + CCNA_00728 0.44 -0.8 784,310 + CCNA_00728 0.44 -1.4 784,325 - CCNA_00728 0.45 +0.6 784,332 + CCNA_00728 0.46 -0.1 784,333 + CCNA_00728 0.46 -0.3 784,340 - CCNA_00728 0.47 -1.2 784,345 + CCNA_00728 0.47 -1.7 784,349 + CCNA_00728 0.48 -1.0 784,366 - CCNA_00728 0.49 -0.5 784,405 + CCNA_00728 0.52 +0.5 784,413 - CCNA_00728 0.53 +0.8 784,413 - CCNA_00728 0.53 -1.1 784,426 + CCNA_00728 0.54 -1.5 784,434 - CCNA_00728 0.55 +1.4 784,465 - CCNA_00728 0.57 +0.8 784,483 - CCNA_00728 0.59 -1.2 784,532 + CCNA_00728 0.63 -1.6 784,551 + CCNA_00728 0.65 -1.0 784,559 - CCNA_00728 0.66 +1.6 784,559 - CCNA_00728 0.66 +0.4 784,563 + CCNA_00728 0.66 -0.3 784,563 + CCNA_00728 0.66 -0.5 784,563 + CCNA_00728 0.66 -0.4 784,571 - CCNA_00728 0.67 -1.0 784,571 - CCNA_00728 0.67 -0.4 784,610 + CCNA_00728 0.70 -1.2 784,616 + CCNA_00728 0.70 -0.7 784,620 + CCNA_00728 0.71 -2.0 784,621 + CCNA_00728 0.71 +0.5 784,634 - CCNA_00728 0.72 -2.2 784,649 - CCNA_00728 0.73 -1.2 784,650 + CCNA_00728 0.73 -0.8 784,674 - CCNA_00728 0.75 +2.0 784,675 + CCNA_00728 0.76 +0.0 784,684 + CCNA_00728 0.76 -0.2 784,693 + CCNA_00728 0.77 -0.9 784,702 - CCNA_00728 0.78 -0.4 784,706 - CCNA_00728 0.78 +1.8 784,720 - CCNA_00728 0.79 -0.2 784,722 + CCNA_00728 0.80 +0.6 784,730 - CCNA_00728 0.80 -2.4 784,787 - CCNA_00728 0.85 +1.4 784,803 + CCNA_00728 0.87 -0.5 784,810 + CCNA_00728 0.87 -1.0 784,880 - -1.4 784,890 - +0.1 784,907 - -3.1 784,963 - -1.2 784,985 + -0.7 785,060 + -0.1 785,060 - -1.9 785,068 - -0.9 785,072 - +1.4 785,131 + +0.5 785,131 + +1.2 785,132 + -1.1 785,132 + +0.4 785,132 + +0.1 785,139 - +0.8 785,140 - +0.5 785,140 - -0.2 785,140 - -0.7 785,140 - -0.6 785,140 - -1.2 785,140 - +2.4 785,183 - +0.6 785,208 + CCNA_00729 0.12 -0.0 785,208 + CCNA_00729 0.12 +0.5 785,254 + CCNA_00729 0.15 +2.0 785,263 - CCNA_00729 0.16 -0.4 785,263 - CCNA_00729 0.16 +0.1 785,263 - CCNA_00729 0.16 +2.2 785,263 - CCNA_00729 0.16 -1.6 785,318 + CCNA_00729 0.20 +0.3 785,379 - CCNA_00729 0.25 +0.2 785,381 + CCNA_00729 0.25 +0.9 785,389 - CCNA_00729 0.26 -1.7 785,389 - CCNA_00729 0.26 -1.0 785,394 - CCNA_00729 0.26 -0.1 785,416 - CCNA_00729 0.28 +0.3 785,416 - CCNA_00729 0.28 +1.1 785,443 - CCNA_00729 0.30 -2.1 785,499 - CCNA_00729 0.34 -0.1 785,499 - CCNA_00729 0.34 -1.3 785,517 - CCNA_00729 0.35 -0.4 785,602 + CCNA_00729 0.42 -0.1 785,648 - CCNA_00729 0.46 -0.3 785,691 + CCNA_00729 0.49 +0.3 785,699 - CCNA_00729 0.49 -0.6 785,701 + CCNA_00729 0.50 +1.1 785,701 + CCNA_00729 0.50 -0.0 785,709 - CCNA_00729 0.50 +0.5 785,734 - CCNA_00729 0.52 -0.1 785,739 + CCNA_00729 0.52 +0.4 785,772 + CCNA_00729 0.55 +0.9 785,782 + CCNA_00729 0.56 +0.7 785,782 + CCNA_00729 0.56 +0.4 785,790 - CCNA_00729 0.56 -0.2 785,790 - CCNA_00729 0.56 -1.2 785,801 + CCNA_00729 0.57 +0.5 785,812 + CCNA_00729 0.58 +1.2 785,812 + CCNA_00729 0.58 -1.0 785,812 + CCNA_00729 0.58 -0.4 785,820 - CCNA_00729 0.59 -1.8 785,820 - CCNA_00729 0.59 -2.2 785,822 + CCNA_00729 0.59 +0.1 785,822 + CCNA_00729 0.59 +0.5 785,848 + CCNA_00729 0.61 +0.4 785,878 + CCNA_00729 0.63 +0.2 785,945 + CCNA_00729 0.68 +0.9
Or see this region's nucleotide sequence