Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00563

Experiment: PYE 25C survival rep1 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00562 and CCNA_00563 overlap by 4 nucleotidesCCNA_00563 and CCNA_00564 are separated by 9 nucleotides CCNA_00562: CCNA_00562 - dihydroorotate dehydrogenase, at 576,665 to 577,723 _00562 CCNA_00563: CCNA_00563 - SNARE-associated family membrane protein, at 577,720 to 578,457 _00563 CCNA_00564: CCNA_00564 - sensory transduction protein kinase CenK, at 578,467 to 579,972 _00564 Position (kb) 577 578 579Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 576.727 kb on - strandat 576.742 kb on + strandat 576.747 kb on + strandat 576.750 kb on - strandat 576.761 kb on - strandat 576.761 kb on - strandat 576.761 kb on - strandat 576.783 kb on + strand, within CCNA_00562at 576.810 kb on + strand, within CCNA_00562at 576.818 kb on - strand, within CCNA_00562at 576.841 kb on - strand, within CCNA_00562at 576.890 kb on + strand, within CCNA_00562at 576.905 kb on - strand, within CCNA_00562at 576.915 kb on + strand, within CCNA_00562at 576.983 kb on + strand, within CCNA_00562at 576.998 kb on + strand, within CCNA_00562at 577.006 kb on - strand, within CCNA_00562at 577.006 kb on - strand, within CCNA_00562at 577.054 kb on - strand, within CCNA_00562at 577.072 kb on - strand, within CCNA_00562at 577.087 kb on - strand, within CCNA_00562at 577.097 kb on - strand, within CCNA_00562at 577.148 kb on + strand, within CCNA_00562at 577.188 kb on + strand, within CCNA_00562at 577.188 kb on + strand, within CCNA_00562at 577.196 kb on - strand, within CCNA_00562at 577.196 kb on - strand, within CCNA_00562at 577.205 kb on + strand, within CCNA_00562at 577.210 kb on + strand, within CCNA_00562at 577.210 kb on + strand, within CCNA_00562at 577.210 kb on + strand, within CCNA_00562at 577.210 kb on + strand, within CCNA_00562at 577.210 kb on + strand, within CCNA_00562at 577.210 kb on + strand, within CCNA_00562at 577.218 kb on - strand, within CCNA_00562at 577.218 kb on - strand, within CCNA_00562at 577.262 kb on + strand, within CCNA_00562at 577.270 kb on - strand, within CCNA_00562at 577.272 kb on - strand, within CCNA_00562at 577.311 kb on + strand, within CCNA_00562at 577.319 kb on - strand, within CCNA_00562at 577.333 kb on + strand, within CCNA_00562at 577.333 kb on + strand, within CCNA_00562at 577.342 kb on - strand, within CCNA_00562at 577.342 kb on - strand, within CCNA_00562at 577.347 kb on - strand, within CCNA_00562at 577.357 kb on + strand, within CCNA_00562at 577.369 kb on + strand, within CCNA_00562at 577.370 kb on - strand, within CCNA_00562at 577.385 kb on - strand, within CCNA_00562at 577.405 kb on - strand, within CCNA_00562at 577.439 kb on - strand, within CCNA_00562at 577.474 kb on + strand, within CCNA_00562at 577.526 kb on + strand, within CCNA_00562at 577.571 kb on + strand, within CCNA_00562at 577.598 kb on + strand, within CCNA_00562at 577.603 kb on + strand, within CCNA_00562at 577.603 kb on + strand, within CCNA_00562at 577.606 kb on - strand, within CCNA_00562at 577.608 kb on + strand, within CCNA_00562at 577.613 kb on + strand, within CCNA_00562at 577.616 kb on - strand, within CCNA_00562at 577.618 kb on + strandat 577.626 kb on - strandat 577.629 kb on + strandat 577.634 kb on + strandat 577.702 kb on - strandat 577.726 kb on - strandat 577.732 kb on - strandat 577.735 kb on + strandat 577.735 kb on + strandat 577.735 kb on + strandat 577.743 kb on - strandat 577.754 kb on + strandat 577.773 kb on + strandat 577.793 kb on - strandat 577.887 kb on + strand, within CCNA_00563at 577.887 kb on + strand, within CCNA_00563at 577.887 kb on + strand, within CCNA_00563at 577.895 kb on - strand, within CCNA_00563at 577.899 kb on + strand, within CCNA_00563at 577.957 kb on - strand, within CCNA_00563at 578.000 kb on + strand, within CCNA_00563at 578.035 kb on + strand, within CCNA_00563at 578.043 kb on - strand, within CCNA_00563at 578.082 kb on - strand, within CCNA_00563at 578.082 kb on - strand, within CCNA_00563at 578.082 kb on - strand, within CCNA_00563at 578.122 kb on + strand, within CCNA_00563at 578.134 kb on + strand, within CCNA_00563at 578.135 kb on + strand, within CCNA_00563at 578.142 kb on - strand, within CCNA_00563at 578.153 kb on + strand, within CCNA_00563at 578.161 kb on - strand, within CCNA_00563at 578.164 kb on + strand, within CCNA_00563at 578.172 kb on - strand, within CCNA_00563at 578.213 kb on + strand, within CCNA_00563at 578.214 kb on + strand, within CCNA_00563at 578.221 kb on + strand, within CCNA_00563at 578.221 kb on + strand, within CCNA_00563at 578.236 kb on - strand, within CCNA_00563at 578.236 kb on - strand, within CCNA_00563at 578.240 kb on + strand, within CCNA_00563at 578.240 kb on + strand, within CCNA_00563at 578.248 kb on - strand, within CCNA_00563at 578.293 kb on + strand, within CCNA_00563at 578.293 kb on + strand, within CCNA_00563at 578.293 kb on + strand, within CCNA_00563at 578.293 kb on + strand, within CCNA_00563at 578.293 kb on + strand, within CCNA_00563at 578.296 kb on - strand, within CCNA_00563at 578.296 kb on - strand, within CCNA_00563at 578.301 kb on - strand, within CCNA_00563at 578.301 kb on - strand, within CCNA_00563at 578.301 kb on - strand, within CCNA_00563at 578.307 kb on - strand, within CCNA_00563at 578.307 kb on - strandat 578.307 kb on - strand, within CCNA_00563at 578.357 kb on + strand, within CCNA_00563

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 25C survival rep1 12 days
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576,727 - +0.8
576,742 + -1.1
576,747 + -1.1
576,750 - -1.2
576,761 - -0.4
576,761 - -1.1
576,761 - -1.4
576,783 + CCNA_00562 0.11 -1.9
576,810 + CCNA_00562 0.14 -1.4
576,818 - CCNA_00562 0.14 -1.4
576,841 - CCNA_00562 0.17 +1.4
576,890 + CCNA_00562 0.21 -2.8
576,905 - CCNA_00562 0.23 +0.4
576,915 + CCNA_00562 0.24 -1.8
576,983 + CCNA_00562 0.30 -1.3
576,998 + CCNA_00562 0.31 -2.2
577,006 - CCNA_00562 0.32 -1.1
577,006 - CCNA_00562 0.32 -1.5
577,054 - CCNA_00562 0.37 -1.6
577,072 - CCNA_00562 0.38 -0.9
577,087 - CCNA_00562 0.40 -1.9
577,097 - CCNA_00562 0.41 -1.4
577,148 + CCNA_00562 0.46 -3.0
577,188 + CCNA_00562 0.49 -2.7
577,188 + CCNA_00562 0.49 -2.3
577,196 - CCNA_00562 0.50 -2.3
577,196 - CCNA_00562 0.50 -1.1
577,205 + CCNA_00562 0.51 -0.6
577,210 + CCNA_00562 0.51 -1.3
577,210 + CCNA_00562 0.51 -0.8
577,210 + CCNA_00562 0.51 -2.8
577,210 + CCNA_00562 0.51 -3.1
577,210 + CCNA_00562 0.51 -2.2
577,210 + CCNA_00562 0.51 +0.1
577,218 - CCNA_00562 0.52 -0.8
577,218 - CCNA_00562 0.52 -0.6
577,262 + CCNA_00562 0.56 -5.3
577,270 - CCNA_00562 0.57 -2.5
577,272 - CCNA_00562 0.57 -1.1
577,311 + CCNA_00562 0.61 -2.5
577,319 - CCNA_00562 0.62 -0.6
577,333 + CCNA_00562 0.63 -0.8
577,333 + CCNA_00562 0.63 -3.9
577,342 - CCNA_00562 0.64 -0.8
577,342 - CCNA_00562 0.64 -0.2
577,347 - CCNA_00562 0.64 -1.8
577,357 + CCNA_00562 0.65 -2.4
577,369 + CCNA_00562 0.66 -0.8
577,370 - CCNA_00562 0.67 -0.1
577,385 - CCNA_00562 0.68 +0.1
577,405 - CCNA_00562 0.70 -1.6
577,439 - CCNA_00562 0.73 -2.5
577,474 + CCNA_00562 0.76 -0.8
577,526 + CCNA_00562 0.81 -3.4
577,571 + CCNA_00562 0.86 -0.3
577,598 + CCNA_00562 0.88 -2.8
577,603 + CCNA_00562 0.89 -1.3
577,603 + CCNA_00562 0.89 -2.0
577,606 - CCNA_00562 0.89 -2.8
577,608 + CCNA_00562 0.89 -2.2
577,613 + CCNA_00562 0.90 -0.9
577,616 - CCNA_00562 0.90 -2.9
577,618 + -3.0
577,626 - -1.4
577,629 + -2.2
577,634 + -3.5
577,702 - +0.8
577,726 - +0.6
577,732 - +1.4
577,735 + +0.4
577,735 + +0.1
577,735 + +0.5
577,743 - -1.1
577,754 + -0.1
577,773 + -1.4
577,793 - -0.8
577,887 + CCNA_00563 0.23 -1.1
577,887 + CCNA_00563 0.23 -0.0
577,887 + CCNA_00563 0.23 -0.2
577,895 - CCNA_00563 0.24 -0.0
577,899 + CCNA_00563 0.24 +0.8
577,957 - CCNA_00563 0.32 -0.9
578,000 + CCNA_00563 0.38 +1.6
578,035 + CCNA_00563 0.43 +1.9
578,043 - CCNA_00563 0.44 +2.4
578,082 - CCNA_00563 0.49 +1.1
578,082 - CCNA_00563 0.49 +1.2
578,082 - CCNA_00563 0.49 +0.4
578,122 + CCNA_00563 0.54 -0.6
578,134 + CCNA_00563 0.56 +0.2
578,135 + CCNA_00563 0.56 +0.6
578,142 - CCNA_00563 0.57 +2.1
578,153 + CCNA_00563 0.59 -1.3
578,161 - CCNA_00563 0.60 +0.4
578,164 + CCNA_00563 0.60 -0.6
578,172 - CCNA_00563 0.61 -1.6
578,213 + CCNA_00563 0.67 +0.1
578,214 + CCNA_00563 0.67 +0.4
578,221 + CCNA_00563 0.68 +0.2
578,221 + CCNA_00563 0.68 +0.1
578,236 - CCNA_00563 0.70 +1.4
578,236 - CCNA_00563 0.70 -1.6
578,240 + CCNA_00563 0.70 -0.0
578,240 + CCNA_00563 0.70 -0.6
578,248 - CCNA_00563 0.72 -1.1
578,293 + CCNA_00563 0.78 -0.8
578,293 + CCNA_00563 0.78 -1.0
578,293 + CCNA_00563 0.78 -0.0
578,293 + CCNA_00563 0.78 -0.8
578,293 + CCNA_00563 0.78 +0.8
578,296 - CCNA_00563 0.78 -1.2
578,296 - CCNA_00563 0.78 -1.5
578,301 - CCNA_00563 0.79 -0.4
578,301 - CCNA_00563 0.79 +0.1
578,301 - CCNA_00563 0.79 -1.1
578,307 - CCNA_00563 0.80 -1.3
578,307 - +2.4
578,307 - CCNA_00563 0.80 -0.9
578,357 + CCNA_00563 0.86 +0.9

Or see this region's nucleotide sequence