Experiment: Defined MoLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2056 and DvMF_2057 overlap by 1 nucleotides DvMF_2057 and DvMF_2058 are separated by 210 nucleotides DvMF_2058 and DvMF_2059 are separated by 281 nucleotides DvMF_2059 and DvMF_2060 are separated by 377 nucleotides
DvMF_2056: DvMF_2056 - thiamine pyrophosphate protein domain protein TPP-binding (RefSeq), at 2,548,364 to 2,549,155
_2056
DvMF_2057: DvMF_2057 - pyruvate ferredoxin/flavodoxin oxidoreductase (RefSeq), at 2,549,155 to 2,549,697
_2057
DvMF_2058: DvMF_2058 - putative superfamily I DNA and RNA helicase protein (RefSeq), at 2,549,908 to 2,555,493
_2058
DvMF_2059: DvMF_2059 - hypothetical protein (RefSeq), at 2,555,775 to 2,556,065
_2059
DvMF_2060: DvMF_2060 - small multidrug resistance protein (RefSeq), at 2,556,443 to 2,556,850
_2060
Position (kb)
2549
2550
2551
2552
2553
2554
2555
2556 Strain fitness (log2 ratio)
-1
0
1
2 at 2548.987 kb on - strand, within DvMF_2056 at 2549.221 kb on + strand, within DvMF_2057 at 2549.409 kb on - strand, within DvMF_2057 at 2549.419 kb on - strand, within DvMF_2057 at 2549.434 kb on + strand, within DvMF_2057 at 2549.434 kb on + strand, within DvMF_2057 at 2549.451 kb on + strand, within DvMF_2057 at 2549.523 kb on + strand, within DvMF_2057 at 2550.018 kb on + strand at 2550.300 kb on - strand at 2550.300 kb on - strand at 2550.604 kb on + strand, within DvMF_2058 at 2550.794 kb on + strand, within DvMF_2058 at 2550.838 kb on - strand, within DvMF_2058 at 2550.907 kb on + strand, within DvMF_2058 at 2550.955 kb on + strand, within DvMF_2058 at 2551.317 kb on - strand, within DvMF_2058 at 2551.484 kb on - strand, within DvMF_2058 at 2552.121 kb on + strand, within DvMF_2058 at 2552.128 kb on - strand, within DvMF_2058 at 2552.268 kb on + strand, within DvMF_2058 at 2552.327 kb on - strand, within DvMF_2058 at 2552.327 kb on - strand, within DvMF_2058 at 2552.547 kb on + strand, within DvMF_2058 at 2552.605 kb on + strand, within DvMF_2058 at 2552.857 kb on - strand, within DvMF_2058 at 2552.953 kb on + strand, within DvMF_2058 at 2553.149 kb on - strand, within DvMF_2058 at 2553.290 kb on + strand, within DvMF_2058 at 2553.300 kb on + strand, within DvMF_2058 at 2553.300 kb on + strand, within DvMF_2058 at 2553.307 kb on + strand, within DvMF_2058 at 2553.308 kb on - strand, within DvMF_2058 at 2553.465 kb on + strand, within DvMF_2058 at 2553.473 kb on - strand, within DvMF_2058 at 2553.483 kb on - strand, within DvMF_2058 at 2553.715 kb on + strand, within DvMF_2058 at 2554.028 kb on + strand, within DvMF_2058 at 2554.195 kb on + strand, within DvMF_2058 at 2554.203 kb on - strand, within DvMF_2058 at 2554.209 kb on - strand, within DvMF_2058 at 2554.325 kb on - strand, within DvMF_2058 at 2554.486 kb on - strand, within DvMF_2058 at 2554.501 kb on + strand, within DvMF_2058 at 2554.504 kb on - strand, within DvMF_2058 at 2554.645 kb on - strand, within DvMF_2058 at 2554.650 kb on - strand, within DvMF_2058 at 2555.011 kb on + strand at 2555.117 kb on + strand at 2555.217 kb on + strand at 2555.316 kb on - strand at 2555.708 kb on + strand at 2555.708 kb on + strand at 2555.716 kb on - strand at 2555.716 kb on - strand at 2555.808 kb on - strand, within DvMF_2059 at 2556.033 kb on + strand, within DvMF_2059 at 2556.051 kb on - strand at 2556.233 kb on - strand at 2556.462 kb on + strand at 2556.470 kb on - strand at 2556.470 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Defined MoLS4 remove 2,548,987 - DvMF_2056 0.79 -0.4 2,549,221 + DvMF_2057 0.12 -0.1 2,549,409 - DvMF_2057 0.47 -1.4 2,549,419 - DvMF_2057 0.49 -0.4 2,549,434 + DvMF_2057 0.51 -1.7 2,549,434 + DvMF_2057 0.51 +1.0 2,549,451 + DvMF_2057 0.55 -1.4 2,549,523 + DvMF_2057 0.68 +0.6 2,550,018 + -0.1 2,550,300 - +0.3 2,550,300 - +0.3 2,550,604 + DvMF_2058 0.12 +0.8 2,550,794 + DvMF_2058 0.16 +0.3 2,550,838 - DvMF_2058 0.17 +0.4 2,550,907 + DvMF_2058 0.18 +0.3 2,550,955 + DvMF_2058 0.19 +0.4 2,551,317 - DvMF_2058 0.25 -0.0 2,551,484 - DvMF_2058 0.28 +0.1 2,552,121 + DvMF_2058 0.40 +0.3 2,552,128 - DvMF_2058 0.40 +1.7 2,552,268 + DvMF_2058 0.42 +0.5 2,552,327 - DvMF_2058 0.43 +0.9 2,552,327 - DvMF_2058 0.43 +0.3 2,552,547 + DvMF_2058 0.47 +0.7 2,552,605 + DvMF_2058 0.48 +1.4 2,552,857 - DvMF_2058 0.53 +0.5 2,552,953 + DvMF_2058 0.55 -0.0 2,553,149 - DvMF_2058 0.58 +1.2 2,553,290 + DvMF_2058 0.61 +0.6 2,553,300 + DvMF_2058 0.61 +0.9 2,553,300 + DvMF_2058 0.61 +0.5 2,553,307 + DvMF_2058 0.61 -0.2 2,553,308 - DvMF_2058 0.61 +0.8 2,553,465 + DvMF_2058 0.64 +0.5 2,553,473 - DvMF_2058 0.64 +2.4 2,553,483 - DvMF_2058 0.64 +0.4 2,553,715 + DvMF_2058 0.68 +0.7 2,554,028 + DvMF_2058 0.74 +0.5 2,554,195 + DvMF_2058 0.77 +0.8 2,554,203 - DvMF_2058 0.77 +0.7 2,554,209 - DvMF_2058 0.77 +0.3 2,554,325 - DvMF_2058 0.79 +0.4 2,554,486 - DvMF_2058 0.82 +0.3 2,554,501 + DvMF_2058 0.82 +0.4 2,554,504 - DvMF_2058 0.82 +1.0 2,554,645 - DvMF_2058 0.85 +0.2 2,554,650 - DvMF_2058 0.85 +0.2 2,555,011 + +0.2 2,555,117 + -0.3 2,555,217 + +0.5 2,555,316 - +0.5 2,555,708 + +0.3 2,555,708 + +0.6 2,555,716 - +0.9 2,555,716 - +0.9 2,555,808 - DvMF_2059 0.11 +0.5 2,556,033 + DvMF_2059 0.89 +0.3 2,556,051 - +1.0 2,556,233 - +1.1 2,556,462 + -0.1 2,556,470 - +1.2 2,556,470 - +0.4
Or see this region's nucleotide sequence