Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1748

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1746 and DvMF_1747 are separated by 120 nucleotidesDvMF_1747 and DvMF_1748 overlap by 4 nucleotidesDvMF_1748 and DvMF_1749 are separated by 264 nucleotides DvMF_1746: DvMF_1746 - Anthranilate synthase (RefSeq), at 2,132,961 to 2,134,523 _1746 DvMF_1747: DvMF_1747 - Prephenate dehydrogenase (RefSeq), at 2,134,644 to 2,135,435 _1747 DvMF_1748: DvMF_1748 - 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq), at 2,135,432 to 2,136,784 _1748 DvMF_1749: DvMF_1749 - prephenate dehydratase (RefSeq), at 2,137,049 to 2,138,305 _1749 Position (kb) 2135 2136 2137Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2136.853 kb on - strandat 2136.899 kb on - strandat 2137.107 kb on + strandat 2137.300 kb on - strand, within DvMF_1749at 2137.316 kb on + strand, within DvMF_1749at 2137.316 kb on + strand, within DvMF_1749at 2137.324 kb on - strand, within DvMF_1749

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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2,136,853 - +0.4
2,136,899 - +0.3
2,137,107 + -5.0
2,137,300 - DvMF_1749 0.20 -4.7
2,137,316 + DvMF_1749 0.21 -3.8
2,137,316 + DvMF_1749 0.21 -3.3
2,137,324 - DvMF_1749 0.22 -3.1

Or see this region's nucleotide sequence