Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0448

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0447 and DvMF_0448 are separated by 289 nucleotidesDvMF_0448 and DvMF_0449 are separated by 232 nucleotides DvMF_0447: DvMF_0447 - amino acid-binding ACT domain protein (RefSeq), at 522,631 to 523,062 _0447 DvMF_0448: DvMF_0448 - molybdopterin oxidoreductase (RefSeq), at 523,352 to 525,337 _0448 DvMF_0449: DvMF_0449 - NAD+ synthetase (RefSeq), at 525,570 to 527,240 _0449 Position (kb) 523 524 525 526Strain fitness (log2 ratio) -1 0 1at 522.534 kb on - strandat 522.792 kb on + strand, within DvMF_0447at 522.818 kb on - strand, within DvMF_0447at 523.644 kb on - strand, within DvMF_0448at 524.104 kb on + strand, within DvMF_0448at 524.439 kb on - strand, within DvMF_0448at 524.519 kb on + strand, within DvMF_0448at 524.524 kb on + strand, within DvMF_0448at 524.527 kb on - strand, within DvMF_0448at 524.527 kb on - strand, within DvMF_0448at 524.532 kb on - strand, within DvMF_0448at 524.560 kb on + strand, within DvMF_0448at 524.611 kb on - strand, within DvMF_0448at 524.611 kb on - strand, within DvMF_0448at 524.763 kb on - strand, within DvMF_0448at 524.819 kb on - strand, within DvMF_0448at 524.858 kb on - strand, within DvMF_0448at 524.912 kb on + strand, within DvMF_0448at 525.014 kb on + strand, within DvMF_0448at 525.178 kb on + strandat 525.187 kb on - strandat 525.545 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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522,534 - +0.8
522,792 + DvMF_0447 0.37 +0.6
522,818 - DvMF_0447 0.43 +0.6
523,644 - DvMF_0448 0.15 +0.5
524,104 + DvMF_0448 0.38 +1.0
524,439 - DvMF_0448 0.55 +0.3
524,519 + DvMF_0448 0.59 +0.4
524,524 + DvMF_0448 0.59 +0.2
524,527 - DvMF_0448 0.59 -0.8
524,527 - DvMF_0448 0.59 +0.5
524,532 - DvMF_0448 0.59 +0.5
524,560 + DvMF_0448 0.61 +0.5
524,611 - DvMF_0448 0.63 +0.7
524,611 - DvMF_0448 0.63 +0.2
524,763 - DvMF_0448 0.71 +0.4
524,819 - DvMF_0448 0.74 +0.8
524,858 - DvMF_0448 0.76 +0.5
524,912 + DvMF_0448 0.79 +0.3
525,014 + DvMF_0448 0.84 +0.9
525,178 + +0.4
525,187 - -0.9
525,545 - -1.6

Or see this region's nucleotide sequence