Experiment: Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0309 and fliI are separated by 135 nucleotides fliI and DVU0311 overlap by 4 nucleotides DVU0311 and fliG overlap by 14 nucleotides
DVU0309: DVU0309 - transcriptional regulator, LysR family (TIGR), at 353,856 to 354,776
DVU0309
DVU0310: fliI - flagellum-specific ATP synthase FliI (TIGR), at 354,912 to 356,225
fliI
DVU0311: DVU0311 - flagellar assembly protein FliH, putative (TIGR), at 356,222 to 356,974
DVU0311
DVU0312: fliG - flagellar motor switch protein FliG (TIGR), at 356,961 to 357,977
fliG
Position (kb) 354
355
356
357 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 353.952 kb on + strand, within DVU0309 at 354.021 kb on + strand, within DVU0309 at 354.021 kb on + strand, within DVU0309 at 354.061 kb on - strand, within DVU0309 at 354.111 kb on - strand, within DVU0309 at 354.116 kb on + strand, within DVU0309 at 354.170 kb on - strand, within DVU0309 at 354.177 kb on - strand, within DVU0309 at 354.219 kb on - strand, within DVU0309 at 354.259 kb on + strand, within DVU0309 at 354.344 kb on + strand, within DVU0309 at 354.398 kb on + strand, within DVU0309 at 354.499 kb on - strand, within DVU0309 at 354.520 kb on + strand, within DVU0309 at 354.538 kb on - strand, within DVU0309 at 354.539 kb on + strand, within DVU0309 at 354.583 kb on + strand, within DVU0309 at 354.591 kb on - strand, within DVU0309 at 354.596 kb on - strand, within DVU0309 at 354.598 kb on + strand, within DVU0309 at 354.624 kb on - strand, within DVU0309 at 354.663 kb on - strand, within DVU0309 at 354.683 kb on - strand, within DVU0309 at 354.701 kb on - strand at 354.701 kb on - strand at 354.712 kb on - strand at 354.796 kb on + strand at 354.804 kb on - strand at 354.938 kb on + strand at 354.940 kb on - strand at 354.978 kb on - strand at 355.167 kb on - strand, within fliI at 355.219 kb on - strand, within fliI at 355.290 kb on + strand, within fliI at 355.290 kb on + strand, within fliI at 355.300 kb on + strand, within fliI at 355.330 kb on - strand, within fliI at 355.335 kb on - strand, within fliI at 355.381 kb on + strand, within fliI at 355.381 kb on + strand, within fliI at 355.408 kb on + strand, within fliI at 355.477 kb on + strand, within fliI at 355.485 kb on - strand, within fliI at 355.628 kb on + strand, within fliI at 355.668 kb on - strand, within fliI at 355.668 kb on - strand, within fliI at 355.703 kb on + strand, within fliI at 355.703 kb on + strand, within fliI at 355.718 kb on + strand, within fliI at 355.774 kb on - strand, within fliI at 355.790 kb on - strand, within fliI at 355.851 kb on - strand, within fliI at 355.920 kb on + strand, within fliI at 355.920 kb on + strand, within fliI at 356.000 kb on + strand, within fliI at 356.008 kb on - strand, within fliI at 356.008 kb on - strand, within fliI at 356.008 kb on - strand, within fliI at 356.012 kb on - strand, within fliI at 356.013 kb on - strand, within fliI at 356.084 kb on + strand, within fliI at 356.085 kb on + strand, within fliI at 356.145 kb on - strand at 356.147 kb on - strand at 356.154 kb on - strand at 356.204 kb on - strand at 356.249 kb on - strand at 356.263 kb on - strand at 356.277 kb on - strand at 356.278 kb on - strand at 356.426 kb on + strand, within DVU0311 at 356.495 kb on + strand, within DVU0311 at 356.516 kb on + strand, within DVU0311 at 356.646 kb on + strand, within DVU0311 at 356.741 kb on - strand, within DVU0311 at 356.797 kb on + strand, within DVU0311 at 356.883 kb on + strand, within DVU0311 at 356.898 kb on - strand, within DVU0311 at 356.926 kb on - strand at 356.927 kb on + strand at 356.936 kb on - strand at 357.003 kb on + strand at 357.003 kb on + strand at 357.045 kb on - strand at 357.047 kb on - strand at 357.060 kb on - strand at 357.069 kb on - strand, within fliG at 357.181 kb on - strand, within fliG at 357.202 kb on + strand, within fliG at 357.202 kb on + strand, within fliG at 357.210 kb on - strand, within fliG
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract remove 353,952 + DVU0309 0.10 +0.7 354,021 + DVU0309 0.18 +0.2 354,021 + DVU0309 0.18 -1.1 354,061 - DVU0309 0.22 +0.0 354,111 - DVU0309 0.28 +0.4 354,116 + DVU0309 0.28 -0.2 354,170 - DVU0309 0.34 -0.6 354,177 - DVU0309 0.35 -0.5 354,219 - DVU0309 0.39 -0.1 354,259 + DVU0309 0.44 +1.2 354,344 + DVU0309 0.53 +2.8 354,398 + DVU0309 0.59 +1.3 354,499 - DVU0309 0.70 -2.2 354,520 + DVU0309 0.72 +0.2 354,538 - DVU0309 0.74 +0.1 354,539 + DVU0309 0.74 +0.1 354,583 + DVU0309 0.79 +1.7 354,591 - DVU0309 0.80 -1.1 354,596 - DVU0309 0.80 +2.3 354,598 + DVU0309 0.81 +0.2 354,624 - DVU0309 0.83 +0.5 354,663 - DVU0309 0.88 +0.9 354,683 - DVU0309 0.90 -0.5 354,701 - -0.3 354,701 - +1.7 354,712 - -1.1 354,796 + +0.7 354,804 - +0.7 354,938 + +3.2 354,940 - +3.5 354,978 - +3.4 355,167 - fliI DVU0310 0.19 +3.1 355,219 - fliI DVU0310 0.23 +3.9 355,290 + fliI DVU0310 0.29 +3.3 355,290 + fliI DVU0310 0.29 +3.4 355,300 + fliI DVU0310 0.30 +2.7 355,330 - fliI DVU0310 0.32 +1.8 355,335 - fliI DVU0310 0.32 +3.3 355,381 + fliI DVU0310 0.36 +3.3 355,381 + fliI DVU0310 0.36 +3.5 355,408 + fliI DVU0310 0.38 +3.4 355,477 + fliI DVU0310 0.43 +2.5 355,485 - fliI DVU0310 0.44 +3.3 355,628 + fliI DVU0310 0.54 +2.6 355,668 - fliI DVU0310 0.58 +3.3 355,668 - fliI DVU0310 0.58 +4.1 355,703 + fliI DVU0310 0.60 +3.1 355,703 + fliI DVU0310 0.60 +3.4 355,718 + fliI DVU0310 0.61 +3.3 355,774 - fliI DVU0310 0.66 +3.8 355,790 - fliI DVU0310 0.67 +2.6 355,851 - fliI DVU0310 0.71 +2.7 355,920 + fliI DVU0310 0.77 +3.2 355,920 + fliI DVU0310 0.77 +3.7 356,000 + fliI DVU0310 0.83 +3.2 356,008 - fliI DVU0310 0.83 +3.6 356,008 - fliI DVU0310 0.83 +3.4 356,008 - fliI DVU0310 0.83 +2.9 356,012 - fliI DVU0310 0.84 +3.3 356,013 - fliI DVU0310 0.84 +2.2 356,084 + fliI DVU0310 0.89 +3.5 356,085 + fliI DVU0310 0.89 +3.0 356,145 - +3.9 356,147 - +3.4 356,154 - +3.2 356,204 - +2.4 356,249 - -0.6 356,263 - +1.2 356,277 - -1.1 356,278 - +3.5 356,426 + DVU0311 0.27 +3.5 356,495 + DVU0311 0.36 +3.3 356,516 + DVU0311 0.39 +3.3 356,646 + DVU0311 0.56 +0.7 356,741 - DVU0311 0.69 +2.4 356,797 + DVU0311 0.76 +3.3 356,883 + DVU0311 0.88 +3.8 356,898 - DVU0311 0.90 +2.9 356,926 - +3.4 356,927 + +2.0 356,936 - +3.6 357,003 + +3.3 357,003 + +3.2 357,045 - +3.0 357,047 - +3.5 357,060 - +3.5 357,069 - fliG DVU0312 0.11 +3.1 357,181 - fliG DVU0312 0.22 +3.8 357,202 + fliG DVU0312 0.24 +3.1 357,202 + fliG DVU0312 0.24 +3.3 357,210 - fliG DVU0312 0.24 +1.2
Or see this region's nucleotide sequence