Experiment: Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt aroK-1 and DVU0893 are separated by 28 nucleotides DVU0893 and aroC are separated by 190 nucleotides aroC and recD are separated by 172 nucleotides
DVU0892: aroK-1 - shikimate kinase (TIGR), at 983,727 to 984,254
aroK-1
DVU0893: DVU0893 - universal stress protein family (TIGR), at 984,283 to 984,765
DVU0893
DVU0894: aroC - chorismate synthase (TIGR), at 984,956 to 986,020
aroC
DVU0895: recD - helicase, RecD/TraA family (TIGR), at 986,193 to 988,421
recD
Position (kb) 984
985
986
987 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 984.079 kb on + strand, within aroK-1 at 984.189 kb on - strand, within aroK-1 at 984.227 kb on - strand at 984.259 kb on + strand at 984.281 kb on - strand at 984.356 kb on + strand, within DVU0893 at 984.377 kb on + strand, within DVU0893 at 984.385 kb on - strand, within DVU0893 at 984.451 kb on + strand, within DVU0893 at 984.515 kb on + strand, within DVU0893 at 984.529 kb on + strand, within DVU0893 at 984.529 kb on + strand, within DVU0893 at 984.683 kb on + strand, within DVU0893 at 984.700 kb on + strand, within DVU0893 at 984.700 kb on + strand, within DVU0893 at 984.700 kb on + strand, within DVU0893 at 984.813 kb on - strand at 984.813 kb on - strand at 984.870 kb on + strand at 984.880 kb on + strand at 984.880 kb on + strand at 984.886 kb on + strand at 984.888 kb on - strand at 984.906 kb on + strand at 985.253 kb on + strand, within aroC at 985.704 kb on - strand, within aroC at 986.055 kb on + strand at 986.063 kb on - strand at 986.063 kb on - strand at 986.063 kb on - strand at 986.063 kb on - strand at 986.067 kb on + strand at 986.067 kb on + strand at 986.075 kb on - strand at 986.082 kb on + strand at 986.117 kb on + strand at 986.134 kb on + strand at 986.160 kb on + strand at 986.196 kb on - strand at 986.218 kb on + strand at 986.302 kb on - strand at 986.302 kb on - strand at 986.304 kb on - strand at 986.338 kb on - strand at 986.417 kb on + strand, within recD at 986.458 kb on - strand, within recD at 986.466 kb on - strand, within recD at 986.508 kb on - strand, within recD at 986.510 kb on + strand, within recD at 986.518 kb on - strand, within recD at 986.518 kb on - strand, within recD at 986.579 kb on + strand, within recD at 986.757 kb on - strand, within recD at 986.861 kb on + strand, within recD at 986.890 kb on - strand, within recD at 986.902 kb on - strand, within recD at 986.945 kb on - strand, within recD at 986.955 kb on - strand, within recD
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract remove 984,079 + aroK-1 DVU0892 0.67 -0.7 984,189 - aroK-1 DVU0892 0.88 -0.6 984,227 - -0.9 984,259 + -1.2 984,281 - -0.9 984,356 + DVU0893 0.15 -2.2 984,377 + DVU0893 0.19 -1.6 984,385 - DVU0893 0.21 +0.3 984,451 + DVU0893 0.35 +0.3 984,515 + DVU0893 0.48 -1.1 984,529 + DVU0893 0.51 -0.6 984,529 + DVU0893 0.51 -0.8 984,683 + DVU0893 0.83 -0.9 984,700 + DVU0893 0.86 +0.9 984,700 + DVU0893 0.86 -0.4 984,700 + DVU0893 0.86 -1.0 984,813 - +0.3 984,813 - -0.5 984,870 + +0.5 984,880 + -0.7 984,880 + -0.2 984,886 + -0.4 984,888 - +0.3 984,906 + +0.9 985,253 + aroC DVU0894 0.28 +0.9 985,704 - aroC DVU0894 0.70 +2.9 986,055 + +0.9 986,063 - -2.0 986,063 - -0.3 986,063 - -0.6 986,063 - +0.3 986,067 + -0.2 986,067 + -1.0 986,075 - -1.0 986,082 + +0.3 986,117 + +1.3 986,134 + +0.9 986,160 + -0.1 986,196 - +0.3 986,218 + +0.1 986,302 - +1.4 986,302 - +0.4 986,304 - +1.9 986,338 - -0.1 986,417 + recD DVU0895 0.10 -0.4 986,458 - recD DVU0895 0.12 +1.9 986,466 - recD DVU0895 0.12 -1.1 986,508 - recD DVU0895 0.14 -1.4 986,510 + recD DVU0895 0.14 +1.3 986,518 - recD DVU0895 0.15 -0.4 986,518 - recD DVU0895 0.15 -1.0 986,579 + recD DVU0895 0.17 +0.9 986,757 - recD DVU0895 0.25 -0.2 986,861 + recD DVU0895 0.30 -0.2 986,890 - recD DVU0895 0.31 +1.5 986,902 - recD DVU0895 0.32 -0.6 986,945 - recD DVU0895 0.34 +1.9 986,955 - recD DVU0895 0.34 +0.7
Or see this region's nucleotide sequence