Experiment: Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0799 and uvrC are separated by 422 nucleotides uvrC and DVU0802 are separated by 87 nucleotides DVU0802 and DVU0803 are separated by 17 nucleotides
DVU0799: DVU0799 - conserved hypothetical protein (TIGR), at 884,379 to 885,779
DVU0799
DVU0801: uvrC - excinuclease ABC, C subunit (TIGR), at 886,202 to 888,310
uvrC
DVU0802: DVU0802 - hypothetical protein (TIGR), at 888,398 to 888,514
DVU0802
DVU0803: DVU0803 - sensor histidine kinase (TIGR), at 888,532 to 889,797
DVU0803
Position (kb) 886
887
888
889 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 885.970 kb on - strand at 886.088 kb on + strand at 886.155 kb on - strand at 886.161 kb on - strand at 886.162 kb on - strand at 886.162 kb on - strand at 886.184 kb on + strand at 886.258 kb on + strand at 886.259 kb on - strand at 886.259 kb on - strand at 886.348 kb on + strand at 886.356 kb on - strand at 886.456 kb on - strand, within uvrC at 886.483 kb on + strand, within uvrC at 886.507 kb on + strand, within uvrC at 886.509 kb on + strand, within uvrC at 886.538 kb on + strand, within uvrC at 886.546 kb on - strand, within uvrC at 886.729 kb on - strand, within uvrC at 886.729 kb on - strand, within uvrC at 886.755 kb on + strand, within uvrC at 886.755 kb on + strand, within uvrC at 886.986 kb on + strand, within uvrC at 886.986 kb on + strand, within uvrC at 886.994 kb on - strand, within uvrC at 887.012 kb on + strand, within uvrC at 887.017 kb on + strand, within uvrC at 887.049 kb on + strand, within uvrC at 887.057 kb on - strand, within uvrC at 887.098 kb on - strand, within uvrC at 887.098 kb on - strand, within uvrC at 887.140 kb on + strand, within uvrC at 887.140 kb on + strand, within uvrC at 887.148 kb on - strand, within uvrC at 887.227 kb on - strand, within uvrC at 887.283 kb on + strand, within uvrC at 887.306 kb on + strand, within uvrC at 887.314 kb on - strand, within uvrC at 887.329 kb on + strand, within uvrC at 887.329 kb on + strand, within uvrC at 887.467 kb on - strand, within uvrC at 887.467 kb on - strand, within uvrC at 887.477 kb on + strand, within uvrC at 887.487 kb on + strand, within uvrC at 887.557 kb on - strand, within uvrC at 887.558 kb on + strand, within uvrC at 887.614 kb on - strand, within uvrC at 887.620 kb on + strand, within uvrC at 887.775 kb on + strand, within uvrC at 887.900 kb on + strand, within uvrC at 887.900 kb on + strand, within uvrC at 887.900 kb on + strand, within uvrC at 887.908 kb on - strand, within uvrC at 887.962 kb on + strand, within uvrC at 887.995 kb on - strand, within uvrC at 888.037 kb on - strand, within uvrC at 888.052 kb on + strand, within uvrC at 888.052 kb on + strand, within uvrC at 888.060 kb on - strand, within uvrC at 888.091 kb on + strand, within uvrC at 888.119 kb on + strand at 888.290 kb on + strand at 888.298 kb on - strand at 888.305 kb on + strand at 888.413 kb on + strand, within DVU0802 at 888.431 kb on - strand, within DVU0802 at 888.528 kb on - strand at 888.548 kb on - strand at 888.587 kb on + strand at 888.697 kb on - strand, within DVU0803 at 888.783 kb on - strand, within DVU0803 at 888.860 kb on + strand, within DVU0803 at 888.865 kb on - strand, within DVU0803 at 888.898 kb on + strand, within DVU0803 at 888.908 kb on + strand, within DVU0803 at 888.916 kb on - strand, within DVU0803 at 888.916 kb on - strand, within DVU0803 at 888.941 kb on + strand, within DVU0803 at 888.961 kb on - strand, within DVU0803 at 889.059 kb on - strand, within DVU0803 at 889.080 kb on - strand, within DVU0803 at 889.116 kb on - strand, within DVU0803 at 889.131 kb on - strand, within DVU0803 at 889.146 kb on - strand, within DVU0803 at 889.163 kb on - strand, within DVU0803
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract remove 885,970 - +4.1 886,088 + -0.8 886,155 - +0.6 886,161 - -0.6 886,162 - -0.1 886,162 - +3.6 886,184 + +1.8 886,258 + -0.2 886,259 - +0.8 886,259 - +0.8 886,348 + -0.4 886,356 - -1.3 886,456 - uvrC DVU0801 0.12 -0.5 886,483 + uvrC DVU0801 0.13 +3.8 886,507 + uvrC DVU0801 0.14 -0.1 886,509 + uvrC DVU0801 0.15 +2.7 886,538 + uvrC DVU0801 0.16 +0.3 886,546 - uvrC DVU0801 0.16 +0.3 886,729 - uvrC DVU0801 0.25 -0.4 886,729 - uvrC DVU0801 0.25 +1.8 886,755 + uvrC DVU0801 0.26 +2.4 886,755 + uvrC DVU0801 0.26 -0.7 886,986 + uvrC DVU0801 0.37 -0.5 886,986 + uvrC DVU0801 0.37 -0.2 886,994 - uvrC DVU0801 0.38 +0.3 887,012 + uvrC DVU0801 0.38 +0.3 887,017 + uvrC DVU0801 0.39 -0.2 887,049 + uvrC DVU0801 0.40 -0.9 887,057 - uvrC DVU0801 0.41 -0.7 887,098 - uvrC DVU0801 0.42 +0.3 887,098 - uvrC DVU0801 0.42 -0.4 887,140 + uvrC DVU0801 0.44 -0.9 887,140 + uvrC DVU0801 0.44 -1.0 887,148 - uvrC DVU0801 0.45 -0.4 887,227 - uvrC DVU0801 0.49 +0.8 887,283 + uvrC DVU0801 0.51 +2.3 887,306 + uvrC DVU0801 0.52 -0.4 887,314 - uvrC DVU0801 0.53 +3.8 887,329 + uvrC DVU0801 0.53 +0.4 887,329 + uvrC DVU0801 0.53 +2.6 887,467 - uvrC DVU0801 0.60 -0.5 887,467 - uvrC DVU0801 0.60 -0.2 887,477 + uvrC DVU0801 0.60 -0.5 887,487 + uvrC DVU0801 0.61 +1.8 887,557 - uvrC DVU0801 0.64 +0.0 887,558 + uvrC DVU0801 0.64 -1.6 887,614 - uvrC DVU0801 0.67 +0.8 887,620 + uvrC DVU0801 0.67 -0.2 887,775 + uvrC DVU0801 0.75 +1.0 887,900 + uvrC DVU0801 0.81 +2.6 887,900 + uvrC DVU0801 0.81 -1.2 887,900 + uvrC DVU0801 0.81 -0.0 887,908 - uvrC DVU0801 0.81 -0.6 887,962 + uvrC DVU0801 0.83 -0.7 887,995 - uvrC DVU0801 0.85 -0.5 888,037 - uvrC DVU0801 0.87 -1.6 888,052 + uvrC DVU0801 0.88 -0.5 888,052 + uvrC DVU0801 0.88 -0.5 888,060 - uvrC DVU0801 0.88 -0.0 888,091 + uvrC DVU0801 0.90 -0.6 888,119 + -0.8 888,290 + -0.7 888,298 - -0.4 888,305 + -1.3 888,413 + DVU0802 0.13 -0.2 888,431 - DVU0802 0.28 +0.4 888,528 - +1.8 888,548 - -0.7 888,587 + +2.7 888,697 - DVU0803 0.13 -0.2 888,783 - DVU0803 0.20 +0.4 888,860 + DVU0803 0.26 -0.4 888,865 - DVU0803 0.26 -0.4 888,898 + DVU0803 0.29 +0.1 888,908 + DVU0803 0.30 -0.2 888,916 - DVU0803 0.30 -0.6 888,916 - DVU0803 0.30 -0.7 888,941 + DVU0803 0.32 -0.5 888,961 - DVU0803 0.34 -0.2 889,059 - DVU0803 0.42 -0.5 889,080 - DVU0803 0.43 -0.3 889,116 - DVU0803 0.46 -0.6 889,131 - DVU0803 0.47 +0.4 889,146 - DVU0803 0.48 -1.1 889,163 - DVU0803 0.50 +2.4
Or see this region's nucleotide sequence