Experiment: Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt atoC and DVU0654 are separated by 20 nucleotides DVU0654 and DVU0655 are separated by 39 nucleotides
DVU0653: atoC - sigma-54 dependent transcriptional regulator, putative/response regulator (TIGR), at 724,910 to 726,595
atoC
DVU0654: DVU0654 - peptidase, U32 family (TIGR), at 726,616 to 727,842
DVU0654
DVU0655: DVU0655 - PHP domain protein (TIGR), at 727,882 to 728,748
DVU0655
Position (kb) 726
727
728 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 725.647 kb on - strand, within atoC at 725.765 kb on - strand, within atoC at 725.826 kb on + strand, within atoC at 725.826 kb on + strand, within atoC at 725.834 kb on - strand, within atoC at 725.834 kb on - strand, within atoC at 725.834 kb on - strand, within atoC at 725.970 kb on + strand, within atoC at 726.002 kb on - strand, within atoC at 726.043 kb on - strand, within atoC at 726.108 kb on - strand, within atoC at 726.271 kb on + strand, within atoC at 726.271 kb on + strand, within atoC at 726.279 kb on - strand, within atoC at 726.279 kb on - strand, within atoC at 726.281 kb on + strand, within atoC at 726.281 kb on + strand, within atoC at 726.382 kb on - strand, within atoC at 726.486 kb on + strand at 726.528 kb on - strand at 726.685 kb on + strand at 726.715 kb on + strand at 726.753 kb on + strand, within DVU0654 at 726.763 kb on + strand, within DVU0654 at 726.816 kb on - strand, within DVU0654 at 726.930 kb on - strand, within DVU0654 at 727.038 kb on + strand, within DVU0654 at 727.132 kb on - strand, within DVU0654 at 727.153 kb on + strand, within DVU0654 at 727.179 kb on + strand, within DVU0654 at 727.273 kb on - strand, within DVU0654 at 727.293 kb on + strand, within DVU0654 at 727.399 kb on + strand, within DVU0654 at 727.440 kb on - strand, within DVU0654 at 727.486 kb on - strand, within DVU0654 at 727.491 kb on - strand, within DVU0654 at 727.536 kb on - strand, within DVU0654 at 727.553 kb on + strand, within DVU0654 at 727.648 kb on + strand, within DVU0654 at 727.656 kb on - strand, within DVU0654 at 727.701 kb on - strand, within DVU0654 at 727.857 kb on + strand at 727.860 kb on - strand at 727.865 kb on - strand at 727.870 kb on - strand at 727.921 kb on - strand at 728.019 kb on + strand, within DVU0655 at 728.064 kb on - strand, within DVU0655 at 728.114 kb on + strand, within DVU0655 at 728.114 kb on + strand, within DVU0655 at 728.114 kb on + strand, within DVU0655 at 728.166 kb on - strand, within DVU0655 at 728.166 kb on - strand, within DVU0655 at 728.173 kb on - strand, within DVU0655 at 728.187 kb on + strand, within DVU0655 at 728.334 kb on - strand, within DVU0655 at 728.379 kb on + strand, within DVU0655 at 728.387 kb on - strand, within DVU0655 at 728.390 kb on - strand, within DVU0655 at 728.510 kb on - strand, within DVU0655 at 728.773 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Thiosulfate (60/30-15 mM) + 0.1% Yeast Extract remove 725,647 - atoC DVU0653 0.44 -1.1 725,765 - atoC DVU0653 0.51 +1.2 725,826 + atoC DVU0653 0.54 +0.2 725,826 + atoC DVU0653 0.54 -0.1 725,834 - atoC DVU0653 0.55 +1.8 725,834 - atoC DVU0653 0.55 -1.7 725,834 - atoC DVU0653 0.55 -2.2 725,970 + atoC DVU0653 0.63 -2.5 726,002 - atoC DVU0653 0.65 +0.3 726,043 - atoC DVU0653 0.67 -1.4 726,108 - atoC DVU0653 0.71 -0.7 726,271 + atoC DVU0653 0.81 +0.2 726,271 + atoC DVU0653 0.81 -1.8 726,279 - atoC DVU0653 0.81 +1.8 726,279 - atoC DVU0653 0.81 -0.6 726,281 + atoC DVU0653 0.81 +0.6 726,281 + atoC DVU0653 0.81 -1.1 726,382 - atoC DVU0653 0.87 +0.2 726,486 + +0.8 726,528 - -1.9 726,685 + +3.3 726,715 + -0.3 726,753 + DVU0654 0.11 +0.4 726,763 + DVU0654 0.12 +1.2 726,816 - DVU0654 0.16 -0.6 726,930 - DVU0654 0.26 +1.8 727,038 + DVU0654 0.34 +1.2 727,132 - DVU0654 0.42 +0.2 727,153 + DVU0654 0.44 -0.8 727,179 + DVU0654 0.46 -0.2 727,273 - DVU0654 0.54 +1.8 727,293 + DVU0654 0.55 -0.2 727,399 + DVU0654 0.64 +3.6 727,440 - DVU0654 0.67 +1.8 727,486 - DVU0654 0.71 -0.7 727,491 - DVU0654 0.71 +1.1 727,536 - DVU0654 0.75 +3.4 727,553 + DVU0654 0.76 -0.2 727,648 + DVU0654 0.84 -0.5 727,656 - DVU0654 0.85 +0.2 727,701 - DVU0654 0.88 -0.8 727,857 + -2.2 727,860 - +1.8 727,865 - -1.7 727,870 - -0.8 727,921 - +3.2 728,019 + DVU0655 0.16 -0.5 728,064 - DVU0655 0.21 -1.7 728,114 + DVU0655 0.27 +0.2 728,114 + DVU0655 0.27 +0.6 728,114 + DVU0655 0.27 +0.0 728,166 - DVU0655 0.33 +1.8 728,166 - DVU0655 0.33 -0.2 728,173 - DVU0655 0.34 -0.4 728,187 + DVU0655 0.35 -0.0 728,334 - DVU0655 0.52 +0.8 728,379 + DVU0655 0.57 -0.4 728,387 - DVU0655 0.58 +2.4 728,390 - DVU0655 0.59 +0.2 728,510 - DVU0655 0.72 -0.1 728,773 + +1.8
Or see this region's nucleotide sequence