Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_874

Experiment: Aluminum chloride 0.00005 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_873 and Pf6N2E2_874 are separated by 115 nucleotidesPf6N2E2_874 and Pf6N2E2_875 are separated by 60 nucleotidesPf6N2E2_875 and Pf6N2E2_876 overlap by 4 nucleotides Pf6N2E2_873 - Methyl-accepting chemotaxis protein, at 1,023,063 to 1,024,352 _873 Pf6N2E2_874 - Predicted cobalt transporter CbtC, at 1,024,468 to 1,025,145 _874 Pf6N2E2_875 - putative metal chaperone, involved in Fe-nitrile hydratase activation, GTPase of COG0523 family, at 1,025,206 to 1,025,646 _875 Pf6N2E2_876 - Cobalt-containing nitrile hydratase subunit beta (EC 4.2.1.84), at 1,025,643 to 1,026,296 _876 Position (kb) 1024 1025 1026Strain fitness (log2 ratio) -2 -1 0 1 2at 1023.656 kb on + strand, within Pf6N2E2_873at 1023.656 kb on + strand, within Pf6N2E2_873at 1023.657 kb on - strand, within Pf6N2E2_873at 1023.657 kb on - strand, within Pf6N2E2_873at 1023.657 kb on - strand, within Pf6N2E2_873at 1023.657 kb on - strand, within Pf6N2E2_873at 1023.835 kb on + strand, within Pf6N2E2_873at 1023.835 kb on + strand, within Pf6N2E2_873at 1023.969 kb on + strand, within Pf6N2E2_873at 1023.970 kb on - strand, within Pf6N2E2_873at 1023.973 kb on + strand, within Pf6N2E2_873at 1023.973 kb on + strand, within Pf6N2E2_873at 1023.974 kb on - strand, within Pf6N2E2_873at 1023.974 kb on - strand, within Pf6N2E2_873at 1023.974 kb on - strand, within Pf6N2E2_873at 1023.974 kb on - strand, within Pf6N2E2_873at 1023.974 kb on - strand, within Pf6N2E2_873at 1023.974 kb on - strand, within Pf6N2E2_873at 1023.974 kb on - strandat 1024.020 kb on + strand, within Pf6N2E2_873at 1024.021 kb on - strand, within Pf6N2E2_873at 1024.021 kb on - strand, within Pf6N2E2_873at 1024.275 kb on + strandat 1024.275 kb on + strandat 1024.276 kb on - strandat 1024.276 kb on - strandat 1024.337 kb on + strandat 1024.338 kb on - strandat 1024.357 kb on + strandat 1024.357 kb on + strandat 1024.357 kb on + strandat 1024.357 kb on + strandat 1024.482 kb on - strandat 1024.586 kb on + strand, within Pf6N2E2_874at 1024.586 kb on + strand, within Pf6N2E2_874at 1024.587 kb on - strand, within Pf6N2E2_874at 1024.587 kb on - strand, within Pf6N2E2_874at 1024.587 kb on - strand, within Pf6N2E2_874at 1024.587 kb on - strand, within Pf6N2E2_874at 1024.587 kb on - strand, within Pf6N2E2_874at 1024.643 kb on + strand, within Pf6N2E2_874at 1024.644 kb on - strand, within Pf6N2E2_874at 1024.713 kb on + strand, within Pf6N2E2_874at 1024.714 kb on - strand, within Pf6N2E2_874at 1024.714 kb on - strand, within Pf6N2E2_874at 1024.715 kb on + strand, within Pf6N2E2_874at 1024.715 kb on + strand, within Pf6N2E2_874at 1024.715 kb on + strand, within Pf6N2E2_874at 1024.716 kb on - strand, within Pf6N2E2_874at 1024.716 kb on - strand, within Pf6N2E2_874at 1024.716 kb on - strand, within Pf6N2E2_874at 1024.730 kb on + strand, within Pf6N2E2_874at 1024.730 kb on + strand, within Pf6N2E2_874at 1024.730 kb on + strand, within Pf6N2E2_874at 1024.730 kb on + strand, within Pf6N2E2_874at 1024.730 kb on + strand, within Pf6N2E2_874at 1024.730 kb on + strand, within Pf6N2E2_874at 1024.731 kb on - strand, within Pf6N2E2_874at 1024.731 kb on - strand, within Pf6N2E2_874at 1024.814 kb on + strand, within Pf6N2E2_874at 1024.815 kb on - strand, within Pf6N2E2_874at 1024.963 kb on + strand, within Pf6N2E2_874at 1024.984 kb on + strand, within Pf6N2E2_874at 1024.984 kb on + strand, within Pf6N2E2_874at 1024.985 kb on - strand, within Pf6N2E2_874at 1024.985 kb on - strand, within Pf6N2E2_874at 1025.069 kb on + strand, within Pf6N2E2_874at 1025.096 kb on + strandat 1025.096 kb on + strandat 1025.096 kb on + strandat 1025.096 kb on + strandat 1025.096 kb on + strandat 1025.096 kb on + strandat 1025.097 kb on - strandat 1025.097 kb on - strandat 1025.130 kb on + strandat 1025.322 kb on + strand, within Pf6N2E2_875at 1025.330 kb on + strand, within Pf6N2E2_875at 1025.330 kb on + strand, within Pf6N2E2_875at 1025.331 kb on - strand, within Pf6N2E2_875at 1025.331 kb on - strand, within Pf6N2E2_875at 1025.331 kb on - strand, within Pf6N2E2_875at 1025.331 kb on - strand, within Pf6N2E2_875at 1025.365 kb on - strand, within Pf6N2E2_875at 1025.365 kb on - strand, within Pf6N2E2_875at 1025.432 kb on + strand, within Pf6N2E2_875at 1025.432 kb on + strand, within Pf6N2E2_875at 1025.432 kb on + strand, within Pf6N2E2_875at 1025.432 kb on + strand, within Pf6N2E2_875at 1025.432 kb on + strand, within Pf6N2E2_875at 1025.433 kb on - strand, within Pf6N2E2_875at 1025.433 kb on - strand, within Pf6N2E2_875at 1025.433 kb on - strand, within Pf6N2E2_875at 1025.433 kb on - strand, within Pf6N2E2_875at 1025.433 kb on - strand, within Pf6N2E2_875at 1025.433 kb on - strand, within Pf6N2E2_875at 1025.433 kb on - strand, within Pf6N2E2_875at 1025.433 kb on - strand, within Pf6N2E2_875at 1025.491 kb on + strand, within Pf6N2E2_875at 1025.492 kb on - strand, within Pf6N2E2_875at 1025.621 kb on + strandat 1025.622 kb on - strandat 1025.622 kb on - strandat 1025.622 kb on - strandat 1025.622 kb on - strandat 1025.647 kb on - strandat 1025.660 kb on - strandat 1025.660 kb on - strandat 1025.660 kb on - strandat 1025.670 kb on + strandat 1025.670 kb on + strandat 1025.737 kb on + strand, within Pf6N2E2_876at 1025.761 kb on - strand, within Pf6N2E2_876at 1025.976 kb on + strand, within Pf6N2E2_876at 1026.092 kb on - strand, within Pf6N2E2_876at 1026.095 kb on - strand, within Pf6N2E2_876at 1026.095 kb on - strand, within Pf6N2E2_876at 1026.109 kb on + strand, within Pf6N2E2_876at 1026.110 kb on - strand, within Pf6N2E2_876at 1026.110 kb on - strand, within Pf6N2E2_876at 1026.110 kb on - strand, within Pf6N2E2_876

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 0.00005 M
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1,023,656 + Pf6N2E2_873 0.46 +0.3
1,023,656 + Pf6N2E2_873 0.46 +0.5
1,023,657 - Pf6N2E2_873 0.46 +0.1
1,023,657 - Pf6N2E2_873 0.46 -1.0
1,023,657 - Pf6N2E2_873 0.46 -0.2
1,023,657 - Pf6N2E2_873 0.46 -0.3
1,023,835 + Pf6N2E2_873 0.60 +0.5
1,023,835 + Pf6N2E2_873 0.60 -1.0
1,023,969 + Pf6N2E2_873 0.70 -0.3
1,023,970 - Pf6N2E2_873 0.70 -0.2
1,023,973 + Pf6N2E2_873 0.71 +1.1
1,023,973 + Pf6N2E2_873 0.71 +1.5
1,023,974 - Pf6N2E2_873 0.71 +0.0
1,023,974 - Pf6N2E2_873 0.71 +0.3
1,023,974 - Pf6N2E2_873 0.71 -2.2
1,023,974 - Pf6N2E2_873 0.71 -0.2
1,023,974 - Pf6N2E2_873 0.71 -0.3
1,023,974 - Pf6N2E2_873 0.71 -0.8
1,023,974 - -0.3
1,024,020 + Pf6N2E2_873 0.74 +1.0
1,024,021 - Pf6N2E2_873 0.74 +1.5
1,024,021 - Pf6N2E2_873 0.74 -0.5
1,024,275 + +0.6
1,024,275 + +0.2
1,024,276 - +2.3
1,024,276 - -0.6
1,024,337 + +0.3
1,024,338 - +0.4
1,024,357 + +0.1
1,024,357 + -0.2
1,024,357 + +0.7
1,024,357 + +0.1
1,024,482 - -0.0
1,024,586 + Pf6N2E2_874 0.17 -0.3
1,024,586 + Pf6N2E2_874 0.17 +0.6
1,024,587 - Pf6N2E2_874 0.18 +0.7
1,024,587 - Pf6N2E2_874 0.18 +0.7
1,024,587 - Pf6N2E2_874 0.18 -1.9
1,024,587 - Pf6N2E2_874 0.18 +1.1
1,024,587 - Pf6N2E2_874 0.18 +0.6
1,024,643 + Pf6N2E2_874 0.26 +0.0
1,024,644 - Pf6N2E2_874 0.26 -0.5
1,024,713 + Pf6N2E2_874 0.36 -0.4
1,024,714 - Pf6N2E2_874 0.36 -1.6
1,024,714 - Pf6N2E2_874 0.36 +0.7
1,024,715 + Pf6N2E2_874 0.36 +0.7
1,024,715 + Pf6N2E2_874 0.36 +0.3
1,024,715 + Pf6N2E2_874 0.36 +1.6
1,024,716 - Pf6N2E2_874 0.37 +0.3
1,024,716 - Pf6N2E2_874 0.37 +0.3
1,024,716 - Pf6N2E2_874 0.37 -0.9
1,024,730 + Pf6N2E2_874 0.39 +1.1
1,024,730 + Pf6N2E2_874 0.39 +1.0
1,024,730 + Pf6N2E2_874 0.39 -0.6
1,024,730 + Pf6N2E2_874 0.39 -2.6
1,024,730 + Pf6N2E2_874 0.39 +1.5
1,024,730 + Pf6N2E2_874 0.39 +1.3
1,024,731 - Pf6N2E2_874 0.39 +0.6
1,024,731 - Pf6N2E2_874 0.39 +1.3
1,024,814 + Pf6N2E2_874 0.51 -1.1
1,024,815 - Pf6N2E2_874 0.51 +0.8
1,024,963 + Pf6N2E2_874 0.73 +0.0
1,024,984 + Pf6N2E2_874 0.76 +0.5
1,024,984 + Pf6N2E2_874 0.76 -1.0
1,024,985 - Pf6N2E2_874 0.76 +0.2
1,024,985 - Pf6N2E2_874 0.76 -1.5
1,025,069 + Pf6N2E2_874 0.89 +0.1
1,025,096 + +1.1
1,025,096 + +1.3
1,025,096 + -1.0
1,025,096 + -1.1
1,025,096 + -0.5
1,025,096 + +0.9
1,025,097 - +0.5
1,025,097 - +0.5
1,025,130 + -1.5
1,025,322 + Pf6N2E2_875 0.26 +0.3
1,025,330 + Pf6N2E2_875 0.28 -0.3
1,025,330 + Pf6N2E2_875 0.28 -0.0
1,025,331 - Pf6N2E2_875 0.28 +0.3
1,025,331 - Pf6N2E2_875 0.28 +0.2
1,025,331 - Pf6N2E2_875 0.28 -0.6
1,025,331 - Pf6N2E2_875 0.28 -0.3
1,025,365 - Pf6N2E2_875 0.36 +1.3
1,025,365 - Pf6N2E2_875 0.36 +0.1
1,025,432 + Pf6N2E2_875 0.51 +0.3
1,025,432 + Pf6N2E2_875 0.51 -2.1
1,025,432 + Pf6N2E2_875 0.51 +0.7
1,025,432 + Pf6N2E2_875 0.51 -2.5
1,025,432 + Pf6N2E2_875 0.51 -0.4
1,025,433 - Pf6N2E2_875 0.51 +1.3
1,025,433 - Pf6N2E2_875 0.51 +0.9
1,025,433 - Pf6N2E2_875 0.51 +0.1
1,025,433 - Pf6N2E2_875 0.51 +0.0
1,025,433 - Pf6N2E2_875 0.51 +0.4
1,025,433 - Pf6N2E2_875 0.51 -0.3
1,025,433 - Pf6N2E2_875 0.51 +1.2
1,025,433 - Pf6N2E2_875 0.51 -0.1
1,025,491 + Pf6N2E2_875 0.65 +0.4
1,025,492 - Pf6N2E2_875 0.65 +0.5
1,025,621 + -0.4
1,025,622 - +0.0
1,025,622 - -0.8
1,025,622 - +0.6
1,025,622 - +0.3
1,025,647 - +1.9
1,025,660 - +1.1
1,025,660 - +1.0
1,025,660 - +1.0
1,025,670 + +1.9
1,025,670 + -2.6
1,025,737 + Pf6N2E2_876 0.14 +0.3
1,025,761 - Pf6N2E2_876 0.18 -1.3
1,025,976 + Pf6N2E2_876 0.51 -1.6
1,026,092 - Pf6N2E2_876 0.69 +0.2
1,026,095 - Pf6N2E2_876 0.69 -0.7
1,026,095 - Pf6N2E2_876 0.69 +0.5
1,026,109 + Pf6N2E2_876 0.71 +0.7
1,026,110 - Pf6N2E2_876 0.71 +1.6
1,026,110 - Pf6N2E2_876 0.71 +0.4
1,026,110 - Pf6N2E2_876 0.71 +0.7

Or see this region's nucleotide sequence