Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_686

Experiment: Aluminum chloride 0.00005 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_685 and Pf6N2E2_686 are separated by 65 nucleotidesPf6N2E2_686 and Pf6N2E2_687 are separated by 253 nucleotidesPf6N2E2_687 and Pf6N2E2_688 are separated by 126 nucleotides Pf6N2E2_685 - Ferrichrome-iron receptor, at 790,648 to 792,777 _685 Pf6N2E2_686 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 792,843 to 793,577 _686 Pf6N2E2_687 - 4-oxalocrotonate tautomerase (EC 5.3.2.-), at 793,831 to 794,037 _687 Pf6N2E2_688 - Transcriptional regulator, LysR family, at 794,164 to 795,087 _688 Position (kb) 792 793 794Strain fitness (log2 ratio) -2 -1 0 1 2at 791.848 kb on - strand, within Pf6N2E2_685at 791.863 kb on + strand, within Pf6N2E2_685at 791.863 kb on + strand, within Pf6N2E2_685at 792.009 kb on + strand, within Pf6N2E2_685at 792.009 kb on + strand, within Pf6N2E2_685at 792.009 kb on + strand, within Pf6N2E2_685at 792.009 kb on + strand, within Pf6N2E2_685at 792.009 kb on + strand, within Pf6N2E2_685at 792.010 kb on - strand, within Pf6N2E2_685at 792.010 kb on - strand, within Pf6N2E2_685at 792.010 kb on - strand, within Pf6N2E2_685at 792.013 kb on + strand, within Pf6N2E2_685at 792.014 kb on - strand, within Pf6N2E2_685at 792.014 kb on - strand, within Pf6N2E2_685at 792.088 kb on + strand, within Pf6N2E2_685at 792.088 kb on + strand, within Pf6N2E2_685at 792.123 kb on + strand, within Pf6N2E2_685at 792.240 kb on - strand, within Pf6N2E2_685at 792.245 kb on + strand, within Pf6N2E2_685at 792.245 kb on + strand, within Pf6N2E2_685at 792.245 kb on + strand, within Pf6N2E2_685at 792.245 kb on + strand, within Pf6N2E2_685at 792.245 kb on + strand, within Pf6N2E2_685at 792.245 kb on + strand, within Pf6N2E2_685at 792.245 kb on + strand, within Pf6N2E2_685at 792.245 kb on + strand, within Pf6N2E2_685at 792.245 kb on + strand, within Pf6N2E2_685at 792.246 kb on - strand, within Pf6N2E2_685at 792.259 kb on + strand, within Pf6N2E2_685at 792.312 kb on + strand, within Pf6N2E2_685at 792.312 kb on + strand, within Pf6N2E2_685at 792.312 kb on + strand, within Pf6N2E2_685at 792.312 kb on + strand, within Pf6N2E2_685at 792.312 kb on + strand, within Pf6N2E2_685at 792.313 kb on - strand, within Pf6N2E2_685at 792.313 kb on - strand, within Pf6N2E2_685at 792.406 kb on + strand, within Pf6N2E2_685at 792.406 kb on + strand, within Pf6N2E2_685at 792.407 kb on - strand, within Pf6N2E2_685at 792.467 kb on + strand, within Pf6N2E2_685at 792.467 kb on + strand, within Pf6N2E2_685at 792.499 kb on + strand, within Pf6N2E2_685at 792.499 kb on + strand, within Pf6N2E2_685at 792.499 kb on + strand, within Pf6N2E2_685at 792.607 kb on + strandat 792.607 kb on + strandat 792.607 kb on + strandat 792.607 kb on + strandat 792.608 kb on - strandat 792.608 kb on - strandat 792.634 kb on + strandat 792.634 kb on + strandat 792.635 kb on - strandat 792.635 kb on - strandat 792.694 kb on + strandat 792.721 kb on + strandat 792.721 kb on + strandat 792.722 kb on - strandat 792.766 kb on + strandat 792.767 kb on - strandat 792.830 kb on - strandat 792.844 kb on + strandat 792.916 kb on + strandat 792.916 kb on + strandat 792.917 kb on - strand, within Pf6N2E2_686at 792.917 kb on - strand, within Pf6N2E2_686at 793.229 kb on - strand, within Pf6N2E2_686at 793.257 kb on + strand, within Pf6N2E2_686at 793.490 kb on + strand, within Pf6N2E2_686at 793.490 kb on + strand, within Pf6N2E2_686at 793.490 kb on + strand, within Pf6N2E2_686at 793.490 kb on + strand, within Pf6N2E2_686at 793.491 kb on - strand, within Pf6N2E2_686at 793.491 kb on - strand, within Pf6N2E2_686at 793.491 kb on - strand, within Pf6N2E2_686at 793.491 kb on - strand, within Pf6N2E2_686at 793.491 kb on - strand, within Pf6N2E2_686at 793.491 kb on - strand, within Pf6N2E2_686at 793.491 kb on - strand, within Pf6N2E2_686at 793.492 kb on + strand, within Pf6N2E2_686at 793.679 kb on + strandat 793.691 kb on + strandat 793.691 kb on + strandat 793.691 kb on + strandat 793.833 kb on - strandat 793.888 kb on - strand, within Pf6N2E2_687at 793.888 kb on - strand, within Pf6N2E2_687at 793.888 kb on - strand, within Pf6N2E2_687at 794.013 kb on + strand, within Pf6N2E2_687at 794.097 kb on + strandat 794.097 kb on + strandat 794.097 kb on + strandat 794.097 kb on + strandat 794.097 kb on + strandat 794.097 kb on + strandat 794.097 kb on + strandat 794.098 kb on - strandat 794.098 kb on - strandat 794.098 kb on - strandat 794.101 kb on + strandat 794.101 kb on + strandat 794.102 kb on - strandat 794.102 kb on - strandat 794.156 kb on - strandat 794.156 kb on - strandat 794.201 kb on + strandat 794.201 kb on + strandat 794.201 kb on + strandat 794.201 kb on + strandat 794.201 kb on + strandat 794.201 kb on + strandat 794.202 kb on - strandat 794.202 kb on - strandat 794.202 kb on - strandat 794.374 kb on + strand, within Pf6N2E2_688at 794.374 kb on + strand, within Pf6N2E2_688at 794.375 kb on - strand, within Pf6N2E2_688at 794.375 kb on - strand, within Pf6N2E2_688at 794.485 kb on + strand, within Pf6N2E2_688at 794.485 kb on + strand, within Pf6N2E2_688at 794.485 kb on + strand, within Pf6N2E2_688at 794.485 kb on + strand, within Pf6N2E2_688at 794.486 kb on - strand, within Pf6N2E2_688at 794.486 kb on - strand, within Pf6N2E2_688at 794.486 kb on - strand, within Pf6N2E2_688at 794.486 kb on - strand, within Pf6N2E2_688

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 0.00005 M
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791,848 - Pf6N2E2_685 0.56 -1.4
791,863 + Pf6N2E2_685 0.57 +0.3
791,863 + Pf6N2E2_685 0.57 -0.1
792,009 + Pf6N2E2_685 0.64 +0.1
792,009 + Pf6N2E2_685 0.64 -0.4
792,009 + Pf6N2E2_685 0.64 +0.7
792,009 + Pf6N2E2_685 0.64 -0.1
792,009 + Pf6N2E2_685 0.64 +1.0
792,010 - Pf6N2E2_685 0.64 +0.2
792,010 - Pf6N2E2_685 0.64 -1.6
792,010 - Pf6N2E2_685 0.64 +0.7
792,013 + Pf6N2E2_685 0.64 +2.1
792,014 - Pf6N2E2_685 0.64 -2.0
792,014 - Pf6N2E2_685 0.64 +1.0
792,088 + Pf6N2E2_685 0.68 +0.4
792,088 + Pf6N2E2_685 0.68 +0.6
792,123 + Pf6N2E2_685 0.69 -0.5
792,240 - Pf6N2E2_685 0.75 -0.3
792,245 + Pf6N2E2_685 0.75 -1.2
792,245 + Pf6N2E2_685 0.75 -0.3
792,245 + Pf6N2E2_685 0.75 +0.6
792,245 + Pf6N2E2_685 0.75 -0.3
792,245 + Pf6N2E2_685 0.75 -0.4
792,245 + Pf6N2E2_685 0.75 +0.1
792,245 + Pf6N2E2_685 0.75 +0.2
792,245 + Pf6N2E2_685 0.75 +2.0
792,245 + Pf6N2E2_685 0.75 -1.4
792,246 - Pf6N2E2_685 0.75 -0.3
792,259 + Pf6N2E2_685 0.76 -1.9
792,312 + Pf6N2E2_685 0.78 +0.7
792,312 + Pf6N2E2_685 0.78 -0.8
792,312 + Pf6N2E2_685 0.78 +0.4
792,312 + Pf6N2E2_685 0.78 -1.0
792,312 + Pf6N2E2_685 0.78 -0.6
792,313 - Pf6N2E2_685 0.78 -0.7
792,313 - Pf6N2E2_685 0.78 +0.1
792,406 + Pf6N2E2_685 0.83 -0.9
792,406 + Pf6N2E2_685 0.83 +0.2
792,407 - Pf6N2E2_685 0.83 -1.0
792,467 + Pf6N2E2_685 0.85 -0.6
792,467 + Pf6N2E2_685 0.85 +0.4
792,499 + Pf6N2E2_685 0.87 +0.6
792,499 + Pf6N2E2_685 0.87 +0.3
792,499 + Pf6N2E2_685 0.87 +0.1
792,607 + +0.4
792,607 + -0.7
792,607 + +0.7
792,607 + -2.5
792,608 - -0.5
792,608 - +0.5
792,634 + +1.1
792,634 + +0.7
792,635 - -1.5
792,635 - +0.9
792,694 + -0.7
792,721 + -1.5
792,721 + -1.5
792,722 - -0.9
792,766 + +0.2
792,767 - -1.1
792,830 - -1.9
792,844 + +0.2
792,916 + +0.2
792,916 + -2.0
792,917 - Pf6N2E2_686 0.10 +0.1
792,917 - Pf6N2E2_686 0.10 -1.0
793,229 - Pf6N2E2_686 0.53 +0.5
793,257 + Pf6N2E2_686 0.56 +1.6
793,490 + Pf6N2E2_686 0.88 +0.7
793,490 + Pf6N2E2_686 0.88 -0.7
793,490 + Pf6N2E2_686 0.88 +0.6
793,490 + Pf6N2E2_686 0.88 +0.2
793,491 - Pf6N2E2_686 0.88 +1.3
793,491 - Pf6N2E2_686 0.88 +0.8
793,491 - Pf6N2E2_686 0.88 +0.4
793,491 - Pf6N2E2_686 0.88 +0.5
793,491 - Pf6N2E2_686 0.88 -0.1
793,491 - Pf6N2E2_686 0.88 +0.5
793,491 - Pf6N2E2_686 0.88 -0.0
793,492 + Pf6N2E2_686 0.88 +0.8
793,679 + +0.9
793,691 + -1.3
793,691 + +0.5
793,691 + +1.1
793,833 - +0.1
793,888 - Pf6N2E2_687 0.28 +1.3
793,888 - Pf6N2E2_687 0.28 +1.3
793,888 - Pf6N2E2_687 0.28 +0.3
794,013 + Pf6N2E2_687 0.88 +0.6
794,097 + -0.7
794,097 + -0.3
794,097 + -0.3
794,097 + +0.3
794,097 + -0.2
794,097 + -0.3
794,097 + -0.5
794,098 - +0.6
794,098 - -0.8
794,098 - -0.0
794,101 + +0.1
794,101 + +0.2
794,102 - +0.5
794,102 - -0.3
794,156 - -0.3
794,156 - +0.3
794,201 + +0.1
794,201 + -0.3
794,201 + +0.0
794,201 + -1.6
794,201 + -1.1
794,201 + -0.6
794,202 - -0.0
794,202 - -0.1
794,202 - +0.3
794,374 + Pf6N2E2_688 0.23 -0.5
794,374 + Pf6N2E2_688 0.23 -0.1
794,375 - Pf6N2E2_688 0.23 +1.0
794,375 - Pf6N2E2_688 0.23 -0.0
794,485 + Pf6N2E2_688 0.35 +1.3
794,485 + Pf6N2E2_688 0.35 -0.3
794,485 + Pf6N2E2_688 0.35 -2.1
794,485 + Pf6N2E2_688 0.35 +0.3
794,486 - Pf6N2E2_688 0.35 -0.5
794,486 - Pf6N2E2_688 0.35 +0.3
794,486 - Pf6N2E2_688 0.35 -0.1
794,486 - Pf6N2E2_688 0.35 -0.2

Or see this region's nucleotide sequence