Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_6045

Experiment: Aluminum chloride 0.00005 M

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_6044 and Pf6N2E2_6045 are separated by 156 nucleotidesPf6N2E2_6045 and Pf6N2E2_6046 are separated by 373 nucleotides Pf6N2E2_6044 - Sensor histidine kinase/response regulator, at 6,863,562 to 6,865,652 _6044 Pf6N2E2_6045 - hypothetical protein, at 6,865,809 to 6,865,994 _6045 Pf6N2E2_6046 - hypothetical protein, at 6,866,368 to 6,866,778 _6046 Position (kb) 6865 6866Strain fitness (log2 ratio) -2 -1 0 1at 6864.855 kb on + strand, within Pf6N2E2_6044at 6864.855 kb on + strand, within Pf6N2E2_6044at 6864.856 kb on - strand, within Pf6N2E2_6044at 6864.902 kb on - strand, within Pf6N2E2_6044at 6864.902 kb on - strand, within Pf6N2E2_6044at 6864.902 kb on - strand, within Pf6N2E2_6044at 6865.212 kb on + strand, within Pf6N2E2_6044at 6865.213 kb on - strand, within Pf6N2E2_6044at 6865.213 kb on - strand, within Pf6N2E2_6044at 6865.453 kb on + strandat 6865.453 kb on + strandat 6865.453 kb on + strandat 6865.453 kb on + strandat 6865.453 kb on + strandat 6865.453 kb on + strandat 6865.453 kb on + strandat 6865.454 kb on - strandat 6865.625 kb on - strandat 6865.636 kb on + strandat 6865.821 kb on + strandat 6865.884 kb on + strand, within Pf6N2E2_6045at 6866.119 kb on - strandat 6866.119 kb on - strandat 6866.127 kb on - strandat 6866.181 kb on + strandat 6866.181 kb on + strandat 6866.181 kb on + strandat 6866.181 kb on + strandat 6866.181 kb on + strandat 6866.182 kb on - strandat 6866.182 kb on - strandat 6866.182 kb on - strandat 6866.185 kb on + strandat 6866.185 kb on + strandat 6866.185 kb on + strandat 6866.185 kb on + strandat 6866.185 kb on + strandat 6866.185 kb on + strandat 6866.186 kb on - strandat 6866.186 kb on - strandat 6866.186 kb on - strandat 6866.186 kb on - strandat 6866.186 kb on - strandat 6866.186 kb on - strandat 6866.186 kb on - strandat 6866.186 kb on - strandat 6866.213 kb on + strandat 6866.213 kb on + strandat 6866.214 kb on - strandat 6866.254 kb on - strandat 6866.306 kb on + strandat 6866.364 kb on + strandat 6866.365 kb on - strandat 6866.365 kb on - strandat 6866.393 kb on + strandat 6866.405 kb on + strandat 6866.405 kb on + strandat 6866.406 kb on - strandat 6866.406 kb on - strandat 6866.406 kb on - strandat 6866.406 kb on - strandat 6866.406 kb on - strandat 6866.471 kb on + strand, within Pf6N2E2_6046at 6866.471 kb on + strand, within Pf6N2E2_6046at 6866.471 kb on + strand, within Pf6N2E2_6046at 6866.472 kb on - strand, within Pf6N2E2_6046at 6866.472 kb on - strand, within Pf6N2E2_6046at 6866.472 kb on - strand, within Pf6N2E2_6046at 6866.753 kb on - strandat 6866.753 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 0.00005 M
remove
6,864,855 + Pf6N2E2_6044 0.62 -0.8
6,864,855 + Pf6N2E2_6044 0.62 +0.3
6,864,856 - Pf6N2E2_6044 0.62 +0.1
6,864,902 - Pf6N2E2_6044 0.64 -0.7
6,864,902 - Pf6N2E2_6044 0.64 -0.4
6,864,902 - Pf6N2E2_6044 0.64 +0.5
6,865,212 + Pf6N2E2_6044 0.79 -0.7
6,865,213 - Pf6N2E2_6044 0.79 +1.2
6,865,213 - Pf6N2E2_6044 0.79 +0.1
6,865,453 + +0.6
6,865,453 + -0.0
6,865,453 + -1.0
6,865,453 + +0.6
6,865,453 + -0.2
6,865,453 + -2.4
6,865,453 + +1.5
6,865,454 - -0.4
6,865,625 - -0.1
6,865,636 + +0.3
6,865,821 + -0.5
6,865,884 + Pf6N2E2_6045 0.40 +1.3
6,866,119 - +0.3
6,866,119 - +0.4
6,866,127 - -0.8
6,866,181 + -0.1
6,866,181 + -0.7
6,866,181 + +0.2
6,866,181 + -0.2
6,866,181 + -0.7
6,866,182 - -0.2
6,866,182 - -0.5
6,866,182 - +0.4
6,866,185 + -0.3
6,866,185 + +0.1
6,866,185 + -0.3
6,866,185 + -0.6
6,866,185 + -0.7
6,866,185 + -0.1
6,866,186 - -0.0
6,866,186 - -0.7
6,866,186 - -0.4
6,866,186 - +0.8
6,866,186 - +0.1
6,866,186 - -0.1
6,866,186 - +1.1
6,866,186 - +0.5
6,866,213 + -2.1
6,866,213 + -0.5
6,866,214 - -0.4
6,866,254 - -0.1
6,866,306 + +1.0
6,866,364 + -0.2
6,866,365 - -0.4
6,866,365 - -0.4
6,866,393 + -0.3
6,866,405 + -0.3
6,866,405 + +0.3
6,866,406 - -0.9
6,866,406 - -0.9
6,866,406 - -0.4
6,866,406 - +1.2
6,866,406 - +0.7
6,866,471 + Pf6N2E2_6046 0.25 -0.8
6,866,471 + Pf6N2E2_6046 0.25 -0.7
6,866,471 + Pf6N2E2_6046 0.25 -0.7
6,866,472 - Pf6N2E2_6046 0.25 -1.3
6,866,472 - Pf6N2E2_6046 0.25 +0.2
6,866,472 - Pf6N2E2_6046 0.25 -0.0
6,866,753 - -0.5
6,866,753 - -0.1

Or see this region's nucleotide sequence