Experiment: Aluminum chloride 0.00005 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1945 and Pf6N2E2_1946 overlap by 4 nucleotides Pf6N2E2_1946 and Pf6N2E2_1947 overlap by 29 nucleotides Pf6N2E2_1947 and Pf6N2E2_1948 are separated by 925 nucleotides
Pf6N2E2_1945 - Pyrroloquinoline-quinone synthase (EC 1.3.3.11), at 2,306,594 to 2,307,346
_1945
Pf6N2E2_1946 - Coenzyme PQQ synthesis protein D, at 2,307,343 to 2,307,618
_1946
Pf6N2E2_1947 - Coenzyme PQQ synthesis protein E, at 2,307,590 to 2,308,759
_1947
Pf6N2E2_1948 - RND efflux system, outer membrane lipoprotein CmeC, at 2,309,685 to 2,311,109
_1948
Position (kb)
2307
2308
2309 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2306.654 kb on + strand at 2306.657 kb on + strand at 2306.690 kb on + strand, within Pf6N2E2_1945 at 2306.690 kb on + strand, within Pf6N2E2_1945 at 2306.690 kb on + strand, within Pf6N2E2_1945 at 2306.690 kb on + strand, within Pf6N2E2_1945 at 2306.690 kb on + strand, within Pf6N2E2_1945 at 2306.690 kb on + strand, within Pf6N2E2_1945 at 2306.691 kb on - strand, within Pf6N2E2_1945 at 2306.691 kb on - strand, within Pf6N2E2_1945 at 2306.691 kb on - strand, within Pf6N2E2_1945 at 2306.691 kb on - strand, within Pf6N2E2_1945 at 2306.691 kb on - strand, within Pf6N2E2_1945 at 2306.691 kb on - strand, within Pf6N2E2_1945 at 2306.691 kb on - strand, within Pf6N2E2_1945 at 2306.691 kb on - strand, within Pf6N2E2_1945 at 2306.691 kb on - strand, within Pf6N2E2_1945 at 2306.748 kb on - strand, within Pf6N2E2_1945 at 2306.941 kb on - strand, within Pf6N2E2_1945 at 2306.972 kb on + strand at 2307.113 kb on + strand, within Pf6N2E2_1945 at 2307.114 kb on - strand, within Pf6N2E2_1945 at 2307.114 kb on - strand, within Pf6N2E2_1945 at 2307.114 kb on - strand, within Pf6N2E2_1945 at 2307.114 kb on - strand, within Pf6N2E2_1945 at 2307.114 kb on - strand, within Pf6N2E2_1945 at 2307.114 kb on - strand, within Pf6N2E2_1945 at 2307.169 kb on + strand, within Pf6N2E2_1945 at 2307.182 kb on + strand, within Pf6N2E2_1945 at 2307.183 kb on - strand, within Pf6N2E2_1945 at 2307.183 kb on - strand, within Pf6N2E2_1945 at 2307.183 kb on - strand, within Pf6N2E2_1945 at 2307.183 kb on - strand, within Pf6N2E2_1945 at 2307.183 kb on - strand, within Pf6N2E2_1945 at 2307.296 kb on + strand at 2307.337 kb on + strand at 2307.337 kb on + strand at 2307.338 kb on - strand at 2307.338 kb on - strand at 2307.343 kb on - strand at 2307.343 kb on - strand at 2307.683 kb on + strand at 2307.707 kb on + strand, within Pf6N2E2_1947 at 2307.708 kb on - strand, within Pf6N2E2_1947 at 2307.887 kb on + strand, within Pf6N2E2_1947 at 2307.887 kb on + strand, within Pf6N2E2_1947 at 2307.887 kb on + strand, within Pf6N2E2_1947 at 2307.887 kb on + strand, within Pf6N2E2_1947 at 2307.888 kb on - strand, within Pf6N2E2_1947 at 2307.888 kb on - strand, within Pf6N2E2_1947 at 2308.248 kb on + strand, within Pf6N2E2_1947 at 2308.636 kb on + strand, within Pf6N2E2_1947 at 2308.637 kb on - strand, within Pf6N2E2_1947 at 2308.639 kb on + strand, within Pf6N2E2_1947 at 2308.689 kb on - strand at 2308.689 kb on - strand at 2308.797 kb on - strand at 2308.833 kb on - strand at 2308.895 kb on + strand at 2308.951 kb on - strand at 2309.078 kb on + strand at 2309.110 kb on - strand at 2309.132 kb on + strand at 2309.204 kb on + strand at 2309.204 kb on + strand at 2309.247 kb on + strand at 2309.351 kb on + strand at 2309.351 kb on + strand at 2309.368 kb on - strand at 2309.368 kb on - strand at 2309.389 kb on - strand at 2309.437 kb on + strand at 2309.481 kb on + strand at 2309.526 kb on + strand at 2309.593 kb on + strand at 2309.600 kb on + strand at 2309.600 kb on + strand at 2309.604 kb on + strand at 2309.604 kb on + strand at 2309.694 kb on - strand at 2309.735 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride 0.00005 M remove 2,306,654 + -1.4 2,306,657 + -0.6 2,306,690 + Pf6N2E2_1945 0.13 -0.5 2,306,690 + Pf6N2E2_1945 0.13 +2.1 2,306,690 + Pf6N2E2_1945 0.13 +0.0 2,306,690 + Pf6N2E2_1945 0.13 +1.0 2,306,690 + Pf6N2E2_1945 0.13 +1.8 2,306,690 + Pf6N2E2_1945 0.13 -1.1 2,306,691 - Pf6N2E2_1945 0.13 +0.0 2,306,691 - Pf6N2E2_1945 0.13 +1.2 2,306,691 - Pf6N2E2_1945 0.13 +0.5 2,306,691 - Pf6N2E2_1945 0.13 +0.9 2,306,691 - Pf6N2E2_1945 0.13 +0.8 2,306,691 - Pf6N2E2_1945 0.13 -0.1 2,306,691 - Pf6N2E2_1945 0.13 -1.0 2,306,691 - Pf6N2E2_1945 0.13 -0.9 2,306,691 - Pf6N2E2_1945 0.13 +0.4 2,306,748 - Pf6N2E2_1945 0.20 -0.8 2,306,941 - Pf6N2E2_1945 0.46 +0.6 2,306,972 + +0.4 2,307,113 + Pf6N2E2_1945 0.69 -0.1 2,307,114 - Pf6N2E2_1945 0.69 -1.0 2,307,114 - Pf6N2E2_1945 0.69 +0.2 2,307,114 - Pf6N2E2_1945 0.69 -0.0 2,307,114 - Pf6N2E2_1945 0.69 -0.7 2,307,114 - Pf6N2E2_1945 0.69 +0.0 2,307,114 - Pf6N2E2_1945 0.69 -1.1 2,307,169 + Pf6N2E2_1945 0.76 -1.4 2,307,182 + Pf6N2E2_1945 0.78 +0.3 2,307,183 - Pf6N2E2_1945 0.78 +0.4 2,307,183 - Pf6N2E2_1945 0.78 -0.8 2,307,183 - Pf6N2E2_1945 0.78 -1.1 2,307,183 - Pf6N2E2_1945 0.78 +0.4 2,307,183 - Pf6N2E2_1945 0.78 +0.6 2,307,296 + -0.1 2,307,337 + +1.1 2,307,337 + +0.7 2,307,338 - -0.1 2,307,338 - -0.1 2,307,343 - -1.1 2,307,343 - -0.3 2,307,683 + +0.8 2,307,707 + Pf6N2E2_1947 0.10 -0.5 2,307,708 - Pf6N2E2_1947 0.10 -0.6 2,307,887 + Pf6N2E2_1947 0.25 -1.7 2,307,887 + Pf6N2E2_1947 0.25 -1.4 2,307,887 + Pf6N2E2_1947 0.25 -0.6 2,307,887 + Pf6N2E2_1947 0.25 +0.7 2,307,888 - Pf6N2E2_1947 0.25 -0.9 2,307,888 - Pf6N2E2_1947 0.25 +0.7 2,308,248 + Pf6N2E2_1947 0.56 -0.4 2,308,636 + Pf6N2E2_1947 0.89 +0.0 2,308,637 - Pf6N2E2_1947 0.89 -0.7 2,308,639 + Pf6N2E2_1947 0.90 -1.9 2,308,689 - -1.1 2,308,689 - +1.2 2,308,797 - -0.0 2,308,833 - -0.1 2,308,895 + -0.9 2,308,951 - -1.9 2,309,078 + +0.1 2,309,110 - +0.3 2,309,132 + +0.4 2,309,204 + +0.4 2,309,204 + +0.4 2,309,247 + -0.1 2,309,351 + +1.0 2,309,351 + +0.4 2,309,368 - +0.3 2,309,368 - +0.2 2,309,389 - -0.3 2,309,437 + -0.1 2,309,481 + -0.6 2,309,526 + -0.6 2,309,593 + -0.6 2,309,600 + -0.1 2,309,600 + -0.0 2,309,604 + -0.6 2,309,604 + +0.0 2,309,694 - -1.1 2,309,735 - +0.9
Or see this region's nucleotide sequence