Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1697

Experiment: Aluminum chloride 0.00005 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1696 and Pf6N2E2_1697 are separated by 116 nucleotidesPf6N2E2_1697 and Pf6N2E2_1698 overlap by 4 nucleotides Pf6N2E2_1696 - Alkanesulfonates-binding protein, at 2,004,570 to 2,005,418 _1696 Pf6N2E2_1697 - Alkanesulfonate monooxygenase (EC 1.14.14.5), at 2,005,535 to 2,006,665 _1697 Pf6N2E2_1698 - amidohydrolase 2, at 2,006,662 to 2,007,510 _1698 Position (kb) 2005 2006 2007Strain fitness (log2 ratio) -1 0 1 2at 2004.849 kb on + strand, within Pf6N2E2_1696at 2004.850 kb on - strand, within Pf6N2E2_1696at 2004.942 kb on + strand, within Pf6N2E2_1696at 2005.008 kb on + strand, within Pf6N2E2_1696at 2005.009 kb on - strand, within Pf6N2E2_1696at 2005.416 kb on + strandat 2005.426 kb on - strandat 2005.584 kb on - strandat 2005.626 kb on - strandat 2005.626 kb on - strandat 2006.057 kb on + strand, within Pf6N2E2_1697at 2006.114 kb on + strand, within Pf6N2E2_1697at 2006.114 kb on + strand, within Pf6N2E2_1697at 2006.115 kb on - strand, within Pf6N2E2_1697at 2006.115 kb on - strand, within Pf6N2E2_1697at 2006.115 kb on - strand, within Pf6N2E2_1697at 2006.319 kb on - strand, within Pf6N2E2_1697at 2006.549 kb on + strand, within Pf6N2E2_1697at 2006.569 kb on - strandat 2006.696 kb on - strandat 2006.969 kb on + strand, within Pf6N2E2_1698at 2006.970 kb on - strand, within Pf6N2E2_1698at 2006.999 kb on + strand, within Pf6N2E2_1698at 2007.101 kb on - strand, within Pf6N2E2_1698at 2007.170 kb on - strand, within Pf6N2E2_1698at 2007.170 kb on - strand, within Pf6N2E2_1698at 2007.313 kb on + strand, within Pf6N2E2_1698at 2007.313 kb on + strand, within Pf6N2E2_1698at 2007.313 kb on + strand, within Pf6N2E2_1698at 2007.314 kb on - strand, within Pf6N2E2_1698at 2007.314 kb on - strand, within Pf6N2E2_1698at 2007.314 kb on - strand, within Pf6N2E2_1698at 2007.314 kb on - strand, within Pf6N2E2_1698at 2007.314 kb on - strand, within Pf6N2E2_1698at 2007.341 kb on - strand, within Pf6N2E2_1698at 2007.548 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 0.00005 M
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2,004,849 + Pf6N2E2_1696 0.33 +0.9
2,004,850 - Pf6N2E2_1696 0.33 +0.7
2,004,942 + Pf6N2E2_1696 0.44 +0.6
2,005,008 + Pf6N2E2_1696 0.52 -1.0
2,005,009 - Pf6N2E2_1696 0.52 -0.2
2,005,416 + -1.6
2,005,426 - -1.2
2,005,584 - -0.6
2,005,626 - +0.4
2,005,626 - +0.1
2,006,057 + Pf6N2E2_1697 0.46 -0.5
2,006,114 + Pf6N2E2_1697 0.51 -0.7
2,006,114 + Pf6N2E2_1697 0.51 -0.5
2,006,115 - Pf6N2E2_1697 0.51 -0.4
2,006,115 - Pf6N2E2_1697 0.51 -0.6
2,006,115 - Pf6N2E2_1697 0.51 -0.6
2,006,319 - Pf6N2E2_1697 0.69 -0.8
2,006,549 + Pf6N2E2_1697 0.90 +1.4
2,006,569 - +1.0
2,006,696 - +0.5
2,006,969 + Pf6N2E2_1698 0.36 -1.1
2,006,970 - Pf6N2E2_1698 0.36 +2.2
2,006,999 + Pf6N2E2_1698 0.40 +0.4
2,007,101 - Pf6N2E2_1698 0.52 +0.1
2,007,170 - Pf6N2E2_1698 0.60 +0.9
2,007,170 - Pf6N2E2_1698 0.60 -0.6
2,007,313 + Pf6N2E2_1698 0.77 -0.3
2,007,313 + Pf6N2E2_1698 0.77 -1.1
2,007,313 + Pf6N2E2_1698 0.77 +0.4
2,007,314 - Pf6N2E2_1698 0.77 +0.0
2,007,314 - Pf6N2E2_1698 0.77 +1.4
2,007,314 - Pf6N2E2_1698 0.77 +0.4
2,007,314 - Pf6N2E2_1698 0.77 +1.5
2,007,314 - Pf6N2E2_1698 0.77 -0.0
2,007,341 - Pf6N2E2_1698 0.80 -0.6
2,007,548 + +0.5

Or see this region's nucleotide sequence