Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06466

Experiment: Protocatechuic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_06465 and H281DRAFT_06466 are separated by 101 nucleotidesH281DRAFT_06466 and H281DRAFT_06467 are separated by 289 nucleotides H281DRAFT_06465: H281DRAFT_06465 - Pimeloyl-ACP methyl ester carboxylesterase, at 568 to 1,704 _06465 H281DRAFT_06466: H281DRAFT_06466 - luciferase family oxidoreductase, group 1, at 1,806 to 2,801 _06466 H281DRAFT_06467: H281DRAFT_06467 - alkanesulfonate monooxygenase, at 3,091 to 4,206 _06467 Position (kb) 1 2 3Strain fitness (log2 ratio) -1 0 1at 0.853 kb on + strand, within H281DRAFT_06465at 0.853 kb on + strand, within H281DRAFT_06465at 0.853 kb on + strand, within H281DRAFT_06465at 0.853 kb on + strand, within H281DRAFT_06465at 0.853 kb on + strand, within H281DRAFT_06465at 0.853 kb on + strand, within H281DRAFT_06465at 0.854 kb on - strand, within H281DRAFT_06465at 0.854 kb on - strand, within H281DRAFT_06465at 0.854 kb on - strand, within H281DRAFT_06465at 0.855 kb on + strand, within H281DRAFT_06465at 0.856 kb on - strand, within H281DRAFT_06465at 0.897 kb on - strand, within H281DRAFT_06465at 0.897 kb on - strand, within H281DRAFT_06465at 1.024 kb on + strand, within H281DRAFT_06465at 1.025 kb on - strand, within H281DRAFT_06465at 1.025 kb on - strand, within H281DRAFT_06465at 1.031 kb on - strand, within H281DRAFT_06465at 1.138 kb on + strandat 1.304 kb on - strand, within H281DRAFT_06465at 1.306 kb on + strand, within H281DRAFT_06465at 1.307 kb on - strand, within H281DRAFT_06465at 1.363 kb on + strand, within H281DRAFT_06465at 1.442 kb on - strandat 1.567 kb on - strand, within H281DRAFT_06465at 1.719 kb on + strandat 2.123 kb on + strand, within H281DRAFT_06466at 2.200 kb on + strand, within H281DRAFT_06466at 2.201 kb on - strand, within H281DRAFT_06466at 2.201 kb on - strand, within H281DRAFT_06466at 2.618 kb on - strand, within H281DRAFT_06466at 2.693 kb on - strand, within H281DRAFT_06466at 2.964 kb on - strandat 3.007 kb on - strandat 3.132 kb on - strandat 3.175 kb on + strandat 3.176 kb on - strandat 3.470 kb on - strand, within H281DRAFT_06467at 3.488 kb on - strand, within H281DRAFT_06467at 3.547 kb on + strand, within H281DRAFT_06467at 3.548 kb on - strand, within H281DRAFT_06467at 3.548 kb on - strand, within H281DRAFT_06467at 3.551 kb on - strand, within H281DRAFT_06467at 3.610 kb on + strand, within H281DRAFT_06467

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
remove
853 + H281DRAFT_06465 0.25 -0.2
853 + H281DRAFT_06465 0.25 +0.4
853 + H281DRAFT_06465 0.25 +0.7
853 + H281DRAFT_06465 0.25 +0.2
853 + H281DRAFT_06465 0.25 +1.4
853 + H281DRAFT_06465 0.25 -0.1
854 - H281DRAFT_06465 0.25 -0.6
854 - H281DRAFT_06465 0.25 +0.1
854 - H281DRAFT_06465 0.25 -0.2
855 + H281DRAFT_06465 0.25 -0.3
856 - H281DRAFT_06465 0.25 -0.4
897 - H281DRAFT_06465 0.29 +0.5
897 - H281DRAFT_06465 0.29 -0.7
1,024 + H281DRAFT_06465 0.40 +0.6
1,025 - H281DRAFT_06465 0.40 +0.6
1,025 - H281DRAFT_06465 0.40 -0.0
1,031 - H281DRAFT_06465 0.41 -0.9
1,138 + -1.5
1,304 - H281DRAFT_06465 0.65 +0.1
1,306 + H281DRAFT_06465 0.65 +0.7
1,307 - H281DRAFT_06465 0.65 +1.3
1,363 + H281DRAFT_06465 0.70 +0.3
1,442 - -0.7
1,567 - H281DRAFT_06465 0.88 +0.6
1,719 + +0.9
2,123 + H281DRAFT_06466 0.32 +0.3
2,200 + H281DRAFT_06466 0.40 -0.1
2,201 - H281DRAFT_06466 0.40 +0.7
2,201 - H281DRAFT_06466 0.40 +0.6
2,618 - H281DRAFT_06466 0.82 +0.8
2,693 - H281DRAFT_06466 0.89 +1.1
2,964 - -0.3
3,007 - +0.8
3,132 - -0.1
3,175 + -0.1
3,176 - +0.0
3,470 - H281DRAFT_06467 0.34 +1.1
3,488 - H281DRAFT_06467 0.36 -0.0
3,547 + H281DRAFT_06467 0.41 +0.1
3,548 - H281DRAFT_06467 0.41 -1.0
3,548 - H281DRAFT_06467 0.41 +0.1
3,551 - H281DRAFT_06467 0.41 -0.1
3,610 + H281DRAFT_06467 0.47 -0.1

Or see this region's nucleotide sequence