Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06323 and H281DRAFT_06324 are separated by 272 nucleotides H281DRAFT_06324 and H281DRAFT_06325 are separated by 204 nucleotides
H281DRAFT_06323: H281DRAFT_06323 - DNA polymerase III, delta subunit, at 107,729 to 108,853
_06323
H281DRAFT_06324: H281DRAFT_06324 - glutamate-5-semialdehyde dehydrogenase, at 109,126 to 110,397
_06324
H281DRAFT_06325: H281DRAFT_06325 - putative membrane protein, at 110,602 to 111,018
_06325
Position (kb) 109
110
111 Strain fitness (log2 ratio) -2
-1
0
1
2 at 109.009 kb on + strand at 109.009 kb on + strand at 109.010 kb on - strand at 109.010 kb on - strand at 109.010 kb on - strand at 109.010 kb on - strand at 109.010 kb on - strand at 109.013 kb on + strand at 109.013 kb on + strand at 109.014 kb on - strand at 109.014 kb on - strand at 109.055 kb on + strand at 109.055 kb on + strand at 109.055 kb on + strand at 109.055 kb on + strand at 109.055 kb on + strand at 109.056 kb on - strand at 109.141 kb on + strand at 109.141 kb on + strand at 109.142 kb on - strand at 109.495 kb on + strand, within H281DRAFT_06324 at 109.717 kb on + strand, within H281DRAFT_06324 at 109.717 kb on + strand, within H281DRAFT_06324 at 109.717 kb on + strand, within H281DRAFT_06324 at 109.718 kb on - strand, within H281DRAFT_06324 at 109.718 kb on - strand, within H281DRAFT_06324 at 109.822 kb on + strand, within H281DRAFT_06324 at 109.822 kb on + strand, within H281DRAFT_06324 at 109.823 kb on - strand, within H281DRAFT_06324 at 109.823 kb on - strand, within H281DRAFT_06324 at 110.080 kb on + strand, within H281DRAFT_06324 at 110.145 kb on + strand, within H281DRAFT_06324 at 110.145 kb on + strand, within H281DRAFT_06324 at 110.145 kb on + strand, within H281DRAFT_06324 at 110.146 kb on - strand, within H281DRAFT_06324 at 110.146 kb on - strand, within H281DRAFT_06324 at 110.146 kb on - strand, within H281DRAFT_06324 at 110.149 kb on + strand, within H281DRAFT_06324 at 110.149 kb on + strand, within H281DRAFT_06324 at 110.150 kb on - strand, within H281DRAFT_06324 at 110.150 kb on - strand, within H281DRAFT_06324 at 110.150 kb on - strand, within H281DRAFT_06324 at 110.150 kb on - strand, within H281DRAFT_06324 at 110.150 kb on - strand, within H281DRAFT_06324 at 110.151 kb on + strand, within H281DRAFT_06324 at 110.151 kb on + strand, within H281DRAFT_06324 at 110.152 kb on - strand, within H281DRAFT_06324 at 110.152 kb on - strand, within H281DRAFT_06324 at 110.152 kb on - strand, within H281DRAFT_06324 at 110.362 kb on + strand at 110.362 kb on + strand at 110.396 kb on - strand at 110.402 kb on + strand at 110.402 kb on + strand at 110.412 kb on + strand at 110.412 kb on + strand at 111.052 kb on - strand at 111.052 kb on - strand at 111.100 kb on + strand at 111.100 kb on + strand at 111.100 kb on + strand at 111.100 kb on + strand at 111.101 kb on - strand at 111.106 kb on - strand at 111.327 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 109,009 + +0.4 109,009 + +0.6 109,010 - +0.2 109,010 - +0.0 109,010 - -0.7 109,010 - -0.3 109,010 - +0.5 109,013 + +0.4 109,013 + +0.3 109,014 - +0.2 109,014 - +0.2 109,055 + +0.0 109,055 + +0.2 109,055 + +1.9 109,055 + -0.4 109,055 + +0.6 109,056 - +1.1 109,141 + +0.8 109,141 + -0.8 109,142 - +0.0 109,495 + H281DRAFT_06324 0.29 -0.4 109,717 + H281DRAFT_06324 0.46 -0.5 109,717 + H281DRAFT_06324 0.46 -2.1 109,717 + H281DRAFT_06324 0.46 -0.4 109,718 - H281DRAFT_06324 0.47 -0.9 109,718 - H281DRAFT_06324 0.47 -1.1 109,822 + H281DRAFT_06324 0.55 -0.5 109,822 + H281DRAFT_06324 0.55 -0.3 109,823 - H281DRAFT_06324 0.55 +0.2 109,823 - H281DRAFT_06324 0.55 -0.3 110,080 + H281DRAFT_06324 0.75 -0.2 110,145 + H281DRAFT_06324 0.80 -0.5 110,145 + H281DRAFT_06324 0.80 -1.1 110,145 + H281DRAFT_06324 0.80 -0.3 110,146 - H281DRAFT_06324 0.80 +0.6 110,146 - H281DRAFT_06324 0.80 -0.5 110,146 - H281DRAFT_06324 0.80 -0.4 110,149 + H281DRAFT_06324 0.80 -0.2 110,149 + H281DRAFT_06324 0.80 -0.9 110,150 - H281DRAFT_06324 0.81 +0.1 110,150 - H281DRAFT_06324 0.81 -0.5 110,150 - H281DRAFT_06324 0.81 -0.7 110,150 - H281DRAFT_06324 0.81 +0.0 110,150 - H281DRAFT_06324 0.81 +0.3 110,151 + H281DRAFT_06324 0.81 +0.0 110,151 + H281DRAFT_06324 0.81 +0.2 110,152 - H281DRAFT_06324 0.81 +0.3 110,152 - H281DRAFT_06324 0.81 -0.4 110,152 - H281DRAFT_06324 0.81 +0.0 110,362 + -1.2 110,362 + -0.4 110,396 - -0.1 110,402 + -0.3 110,402 + +0.5 110,412 + +0.4 110,412 + +0.0 111,052 - +0.3 111,052 - +0.3 111,100 + +0.3 111,100 + -0.2 111,100 + +0.2 111,100 + +0.6 111,101 - -0.2 111,106 - -1.0 111,327 + -0.6
Or see this region's nucleotide sequence