Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05913 and H281DRAFT_05914 are separated by 505 nucleotides H281DRAFT_05914 and H281DRAFT_05915 are separated by 81 nucleotides H281DRAFT_05915 and H281DRAFT_05916 are separated by 265 nucleotides
H281DRAFT_05913: H281DRAFT_05913 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 46,570 to 47,559
_05913
H281DRAFT_05914: H281DRAFT_05914 - hypothetical protein, at 48,065 to 48,724
_05914
H281DRAFT_05915: H281DRAFT_05915 - hypothetical protein, at 48,806 to 49,144
_05915
H281DRAFT_05916: H281DRAFT_05916 - hypothetical protein, at 49,410 to 49,718
_05916
Position (kb) 48
49 Strain fitness (log2 ratio) -1
0
1
2 at 47.101 kb on + strand, within H281DRAFT_05913 at 47.119 kb on + strand, within H281DRAFT_05913 at 47.189 kb on + strand, within H281DRAFT_05913 at 47.263 kb on - strand, within H281DRAFT_05913 at 47.263 kb on - strand, within H281DRAFT_05913 at 47.265 kb on + strand, within H281DRAFT_05913 at 47.265 kb on + strand, within H281DRAFT_05913 at 47.265 kb on + strand, within H281DRAFT_05913 at 47.266 kb on - strand, within H281DRAFT_05913 at 47.266 kb on - strand, within H281DRAFT_05913 at 47.476 kb on + strand at 47.476 kb on + strand at 47.531 kb on + strand at 47.631 kb on - strand at 47.782 kb on + strand at 48.076 kb on + strand at 48.579 kb on + strand, within H281DRAFT_05914 at 48.580 kb on - strand, within H281DRAFT_05914 at 48.708 kb on + strand at 48.999 kb on + strand, within H281DRAFT_05915 at 49.183 kb on - strand at 49.183 kb on - strand at 49.307 kb on + strand at 49.353 kb on - strand at 49.432 kb on + strand at 49.433 kb on - strand at 49.435 kb on + strand at 49.436 kb on - strand at 49.567 kb on - strand, within H281DRAFT_05916 at 49.567 kb on - strand, within H281DRAFT_05916
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 47,101 + H281DRAFT_05913 0.54 +0.4 47,119 + H281DRAFT_05913 0.55 +0.5 47,189 + H281DRAFT_05913 0.63 +0.9 47,263 - H281DRAFT_05913 0.70 +2.5 47,263 - H281DRAFT_05913 0.70 +0.1 47,265 + H281DRAFT_05913 0.70 +0.2 47,265 + H281DRAFT_05913 0.70 +0.3 47,265 + H281DRAFT_05913 0.70 +0.1 47,266 - H281DRAFT_05913 0.70 +0.6 47,266 - H281DRAFT_05913 0.70 -1.5 47,476 + -1.7 47,476 + -0.2 47,531 + +0.9 47,631 - +0.0 47,782 + +0.1 48,076 + -0.0 48,579 + H281DRAFT_05914 0.78 +0.4 48,580 - H281DRAFT_05914 0.78 +0.5 48,708 + +0.3 48,999 + H281DRAFT_05915 0.57 +0.5 49,183 - +0.7 49,183 - +0.2 49,307 + +0.1 49,353 - +0.4 49,432 + +0.4 49,433 - -0.5 49,435 + -0.4 49,436 - +0.5 49,567 - H281DRAFT_05916 0.51 -0.1 49,567 - H281DRAFT_05916 0.51 +0.2
Or see this region's nucleotide sequence