Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05774 and H281DRAFT_05775 are separated by 40 nucleotides H281DRAFT_05775 and H281DRAFT_05776 are separated by 58 nucleotides H281DRAFT_05776 and H281DRAFT_05777 overlap by 1 nucleotides H281DRAFT_05777 and H281DRAFT_05778 overlap by 4 nucleotides
H281DRAFT_05774: H281DRAFT_05774 - flagellar biosynthetic protein FliR, at 48,952 to 49,734
_05774
H281DRAFT_05775: H281DRAFT_05775 - flagellar biosynthetic protein FliQ, at 49,775 to 50,044
_05775
H281DRAFT_05776: H281DRAFT_05776 - flagellar biosynthetic protein FliP, at 50,103 to 50,936
_05776
H281DRAFT_05777: H281DRAFT_05777 - flagellar protein FliO/FliZ, at 50,936 to 51,547
_05777
H281DRAFT_05778: H281DRAFT_05778 - flagellar motor switch protein FliN/FliY, at 51,544 to 52,011
_05778
Position (kb) 50
51 Strain fitness (log2 ratio) -1
0
1 at 49.349 kb on + strand, within H281DRAFT_05774 at 49.350 kb on - strand, within H281DRAFT_05774 at 49.718 kb on + strand at 49.719 kb on - strand at 50.001 kb on + strand, within H281DRAFT_05775 at 50.001 kb on + strand, within H281DRAFT_05775 at 50.001 kb on + strand, within H281DRAFT_05775 at 50.002 kb on - strand, within H281DRAFT_05775 at 50.002 kb on - strand, within H281DRAFT_05775 at 50.309 kb on + strand at 50.313 kb on - strand, within H281DRAFT_05776 at 50.500 kb on + strand, within H281DRAFT_05776 at 50.513 kb on - strand, within H281DRAFT_05776 at 50.725 kb on + strand, within H281DRAFT_05776 at 50.725 kb on + strand, within H281DRAFT_05776 at 51.050 kb on - strand, within H281DRAFT_05777 at 51.050 kb on - strand, within H281DRAFT_05777 at 51.124 kb on + strand, within H281DRAFT_05777 at 51.124 kb on + strand, within H281DRAFT_05777 at 51.579 kb on + strand at 51.580 kb on - strand at 51.580 kb on - strand at 51.600 kb on + strand, within H281DRAFT_05778
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 49,349 + H281DRAFT_05774 0.51 -0.1 49,350 - H281DRAFT_05774 0.51 +0.3 49,718 + +0.3 49,719 - +0.6 50,001 + H281DRAFT_05775 0.84 -0.0 50,001 + H281DRAFT_05775 0.84 -0.4 50,001 + H281DRAFT_05775 0.84 +0.3 50,002 - H281DRAFT_05775 0.84 +0.2 50,002 - H281DRAFT_05775 0.84 +0.9 50,309 + +0.6 50,313 - H281DRAFT_05776 0.25 +0.6 50,500 + H281DRAFT_05776 0.48 -0.8 50,513 - H281DRAFT_05776 0.49 +1.3 50,725 + H281DRAFT_05776 0.75 +0.4 50,725 + H281DRAFT_05776 0.75 +0.1 51,050 - H281DRAFT_05777 0.19 +0.5 51,050 - H281DRAFT_05777 0.19 -0.3 51,124 + H281DRAFT_05777 0.31 -0.5 51,124 + H281DRAFT_05777 0.31 +0.6 51,579 + +1.1 51,580 - +0.3 51,580 - +0.3 51,600 + H281DRAFT_05778 0.12 +0.3
Or see this region's nucleotide sequence