Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05761 and H281DRAFT_05762 are separated by 215 nucleotides H281DRAFT_05762 and H281DRAFT_05763 are separated by 102 nucleotides H281DRAFT_05763 and H281DRAFT_05764 are separated by 10 nucleotides H281DRAFT_05764 and H281DRAFT_05765 are separated by 42 nucleotides
H281DRAFT_05761: H281DRAFT_05761 - flagella basal body P-ring formation protein FlgA, at 34,497 to 36,059
_05761
H281DRAFT_05762: H281DRAFT_05762 - flagellar basal-body rod protein FlgB, at 36,275 to 36,766
_05762
H281DRAFT_05763: H281DRAFT_05763 - flagellar basal-body rod protein FlgC, at 36,869 to 37,294
_05763
H281DRAFT_05764: H281DRAFT_05764 - flagellar basal-body rod modification protein FlgD, at 37,305 to 38,036
_05764
H281DRAFT_05765: H281DRAFT_05765 - flagellar hook protein FlgE, at 38,079 to 39,587
_05765
Position (kb) 36
37
38 Strain fitness (log2 ratio) -1
0
1
2
3 at 36.086 kb on - strand at 36.099 kb on + strand at 36.099 kb on + strand at 36.099 kb on + strand at 36.100 kb on - strand at 36.131 kb on - strand at 36.151 kb on - strand at 36.151 kb on - strand at 36.183 kb on - strand at 36.274 kb on + strand at 36.275 kb on - strand at 36.275 kb on - strand at 36.275 kb on - strand at 36.387 kb on - strand, within H281DRAFT_05762 at 36.458 kb on - strand, within H281DRAFT_05762 at 36.652 kb on + strand, within H281DRAFT_05762 at 36.801 kb on + strand at 36.827 kb on + strand at 36.888 kb on + strand at 36.888 kb on + strand at 36.888 kb on + strand at 36.888 kb on + strand at 36.889 kb on - strand at 36.889 kb on - strand at 36.889 kb on - strand at 36.889 kb on - strand at 36.889 kb on - strand at 36.889 kb on - strand at 36.889 kb on - strand at 36.995 kb on + strand, within H281DRAFT_05763 at 36.996 kb on - strand, within H281DRAFT_05763 at 36.996 kb on - strand, within H281DRAFT_05763 at 36.996 kb on - strand, within H281DRAFT_05763 at 37.157 kb on + strand, within H281DRAFT_05763 at 37.158 kb on - strand, within H281DRAFT_05763 at 37.365 kb on - strand at 37.872 kb on + strand, within H281DRAFT_05764 at 37.873 kb on - strand, within H281DRAFT_05764 at 37.970 kb on + strand at 37.970 kb on + strand at 38.035 kb on - strand at 38.053 kb on - strand at 38.163 kb on - strand at 38.163 kb on - strand at 38.205 kb on + strand at 38.206 kb on - strand at 38.206 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 36,086 - -0.6 36,099 + -0.2 36,099 + -1.4 36,099 + +0.7 36,100 - +0.0 36,131 - +0.4 36,151 - +0.6 36,151 - +0.1 36,183 - +0.7 36,274 + -0.4 36,275 - +0.4 36,275 - +0.6 36,275 - +0.8 36,387 - H281DRAFT_05762 0.23 +0.2 36,458 - H281DRAFT_05762 0.37 +0.4 36,652 + H281DRAFT_05762 0.77 +0.2 36,801 + +0.1 36,827 + +0.1 36,888 + +0.5 36,888 + +0.2 36,888 + +0.2 36,888 + +1.0 36,889 - +1.1 36,889 - +0.2 36,889 - -0.2 36,889 - +0.6 36,889 - +0.2 36,889 - +0.9 36,889 - +0.6 36,995 + H281DRAFT_05763 0.30 +2.8 36,996 - H281DRAFT_05763 0.30 +0.5 36,996 - H281DRAFT_05763 0.30 +0.1 36,996 - H281DRAFT_05763 0.30 +0.6 37,157 + H281DRAFT_05763 0.68 +0.6 37,158 - H281DRAFT_05763 0.68 +0.1 37,365 - +0.6 37,872 + H281DRAFT_05764 0.77 -0.5 37,873 - H281DRAFT_05764 0.78 -0.0 37,970 + +0.6 37,970 + +0.2 38,035 - +0.2 38,053 - +1.0 38,163 - +0.7 38,163 - -0.4 38,205 + +0.1 38,206 - +0.3 38,206 - -0.2
Or see this region's nucleotide sequence